Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC090912.3-201ENST00000609775 533 ntBASIC3.32□□□□□ -1.88
SKA3Q8IX90 AC124016.2-201ENST00000610058 665 ntBASIC3.32□□□□□ -1.88
SKA3Q8IX90 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SKA3Q8IX90 AL359535.1-201ENST00000612100 1087 ntBASIC3.32□□□□□ -1.88
SKA3Q8IX90 RNU6-1192P-201ENST00000612197 107 ntBASIC3.32□□□□□ -1.88
SKA3Q8IX90 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.32□□□□□ -1.88
SKA3Q8IX90 RNU6-489P-201ENST00000618289 107 ntBASIC3.32□□□□□ -1.88
SKA3Q8IX90 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
SKA3Q8IX90 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SKA3Q8IX90 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SKA3Q8IX90 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
SKA3Q8IX90 AC107081.3-201ENST00000612715 2034 ntBASIC3.32□□□□□ -1.88
SKA3Q8IX90 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SKA3Q8IX90 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SKA3Q8IX90 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SKA3Q8IX90 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC000367.1-201ENST00000452711 1766 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 RNU6-549P-201ENST00000384433 107 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 RNU6-1257P-201ENST00000384625 110 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 RNU6-1000P-201ENST00000391066 106 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 RPL7P27-201ENST00000403775 720 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 RNU2-21P-201ENST00000410368 188 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 PTP4A1P7-201ENST00000423476 514 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 ELOCP6-201ENST00000429066 328 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AL592437.1-201ENST00000443781 492 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 ELOCP12-201ENST00000458706 328 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 RPS20P21-201ENST00000466859 343 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AP002884.2-201ENST00000471647 395 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC008427.1-201ENST00000503102 655 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 SNX5P1-201ENST00000505757 1041 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC119751.1-201ENST00000513357 765 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC093853.1-201ENST00000515689 483 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 HIGD1AP6-201ENST00000521833 279 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC004217.3-201ENST00000551552 878 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 BPTFP1-201ENST00000579209 492 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC107982.3-201ENST00000584957 985 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 BNIP3P27-201ENST00000599991 412 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC099778.2-201ENST00000610904 211 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC005344.1-201ENST00000613391 459 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 AC091905.1-201ENST00000624400 311 ntBASIC3.31□□□□□ -1.88
SKA3Q8IX90 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.31□□□□□ -1.88
SKA3Q8IX90 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SKA3Q8IX90 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC024560.2-201ENST00000507981 1497 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 GABPAP-201ENST00000419271 1356 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 MTND4P9-201ENST00000507819 1346 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 MIR16-1-201ENST00000385271 89 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 RPL32P23-201ENST00000397237 405 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 FABP12P1-201ENST00000401911 322 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 OR51A3P-201ENST00000413596 924 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL591419.1-201ENST00000427423 339 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 OR4F13P-201ENST00000428478 931 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC008065.1-201ENST00000428525 348 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 UBDP1-202ENST00000457888 382 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC092451.1-201ENST00000480211 153 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC069306.1-201ENST00000507006 843 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms