Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC091953.5-201ENST00000622919 233 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LGI1-209ENST00000627699 664 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC006042.3-201ENST00000454684 1469 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 MAPK10-266ENST00000641066 6555 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 FRG1BP-201ENST00000278882 761 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 MIR26A1-201ENST00000362205 77 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 U8.8-201ENST00000365399 135 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 MTND2P15-201ENST00000418575 892 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 CKS1BP5-201ENST00000434172 273 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 CEACAMP7-201ENST00000444105 496 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AC011753.1-201ENST00000451001 220 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AL133162.1-201ENST00000463228 453 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 UQCRHP4-201ENST00000471686 272 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 RPL37P23-201ENST00000492641 294 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 MTND3P24-201ENST00000506306 329 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 CASP1-216ENST00000534497 825 ntTSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 HPRT1P3-201ENST00000539521 576 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 RN7SL600P-201ENST00000581811 299 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 VN1R78P-201ENST00000597393 564 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AP003117.1-201ENST00000602771 554 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 AC008962.1-201ENST00000605729 304 ntBASIC1.74□□□□□ -2.13
LINC00643Q86TS7 METTL8-218ENST00000638989 876 ntTSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 METTL8-219ENST00000640734 726 ntTSL 2 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
LINC00643Q86TS7 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC005261.4-201ENST00000600047 1385 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 MTCO1P8-201ENST00000416914 1523 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC079741.1-201ENST00000321498 212 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RNA5SP130-201ENST00000364431 114 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RNU6-213P-201ENST00000384051 104 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RPS27AP11-201ENST00000402798 447 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RBM43P1-201ENST00000476891 1081 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC126182.1-201ENST00000478134 357 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RPL30P11-201ENST00000495304 339 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 OR8L1P-201ENST00000534005 955 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 HIGD1AP1-201ENST00000550979 275 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 PCNPP1-201ENST00000552501 511 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 MIR2682-201ENST00000580305 110 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC005191.1-201ENST00000603950 358 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AL137843.1-201ENST00000605078 385 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC015849.2-201ENST00000605738 409 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 AC007318.2-201ENST00000620999 243 ntBASIC1.73□□□□□ -2.13
LINC00643Q86TS7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.73□□□□□ -2.13
LINC00643Q86TS7 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AP001350.1-201ENST00000601906 1524 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AL512646.1-201ENST00000269395 1077 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AL596028.1-201ENST00000326971 197 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms