Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL354798.1-201ENST00000622505 329 ntBASIC4.33□□□□□ -1.72
USP41Q3LFD5 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP41Q3LFD5 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP41Q3LFD5 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
USP41Q3LFD5 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP41Q3LFD5 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP41Q3LFD5 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP41Q3LFD5 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP41Q3LFD5 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USP41Q3LFD5 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 FAM133CP-201ENST00000332869 704 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RNU6-492P-201ENST00000363035 104 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RNU6-1214P-201ENST00000363650 109 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RNU6-213P-201ENST00000384051 104 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 MIR670-201ENST00000390142 98 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 HSPD1P16-201ENST00000402302 394 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 MTCO3P31-201ENST00000405526 789 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RNA5SP80-201ENST00000410475 111 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 FCF1P2-201ENST00000415284 583 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC008280.1-201ENST00000418851 412 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC009237.2-201ENST00000421358 284 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL138785.1-201ENST00000425821 331 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RPL36P19-201ENST00000430744 301 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL513175.1-201ENST00000431492 780 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 ATP5F1P1-201ENST00000433775 569 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 VN1R34P-201ENST00000447387 883 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL162388.1-201ENST00000450912 352 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC010307.1-201ENST00000467206 836 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC116353.3-201ENST00000511215 249 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RNU5A-4P-201ENST00000516588 111 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 UBTFL10-201ENST00000528532 562 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC091516.1-201ENST00000549191 703 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL132657.2-201ENST00000564417 358 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL360157.1-201ENST00000565962 87 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC093519.1-201ENST00000566109 298 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 RPL23AP87-202ENST00000573039 466 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL390838.2-201ENST00000602394 274 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 DUXAP3-201ENST00000603616 594 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC068313.1-201ENST00000604028 1008 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AC090246.1-201ENST00000616499 426 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL512506.2-201ENST00000624472 458 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AP005264.7-201ENST00000625003 745 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 AL049555.1-201ENST00000562834 1933 ntBASIC4.32□□□□□ -1.72
USP41Q3LFD5 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP41Q3LFD5 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP41Q3LFD5 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.32□□□□□ -1.72
USP41Q3LFD5 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP41Q3LFD5 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 DBF4P1-201ENST00000412976 1892 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP41Q3LFD5 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP41Q3LFD5 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP41Q3LFD5 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 RNA5SP171-201ENST00000391071 115 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 TAF9BP1-201ENST00000396646 746 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 AL590704.1-201ENST00000402856 794 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 RPL23AP48-201ENST00000406913 488 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 RPS23P10-201ENST00000416185 486 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 VPS26BP1-201ENST00000417155 755 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP41Q3LFD5 AL391219.1-201ENST00000422570 483 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 RPL30P3-201ENST00000424262 333 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 AC018644.1-201ENST00000429934 551 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 AL034418.1-201ENST00000448675 860 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 HMGB3P22-202ENST00000451823 572 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 RAD23BP3-201ENST00000454157 1152 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 AL139099.1-201ENST00000497398 403 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 BOLA3P3-201ENST00000505182 232 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 MTATP6P22-201ENST00000507369 598 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.31□□□□□ -1.72
USP41Q3LFD5 SNORA3.4-201ENST00000515969 96 ntBASIC4.31□□□□□ -1.72
USP41Q3LFD5 RNU6-1225P-201ENST00000516336 65 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms