Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX4Q06945 RPS20P32-201ENST00000456044 356 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC026410.2-201ENST00000460281 156 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 AL163973.1-201ENST00000484753 577 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AP001025.2-201ENST00000490908 477 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC017037.1-201ENST00000508460 471 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC018630.1-201ENST00000541376 925 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 MIR4420-201ENST00000583944 77 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC008687.2-201ENST00000597865 520 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 DPPA3P3-201ENST00000603842 430 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AP001330.4-201ENST00000604350 154 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AL627309.6-201ENST00000606857 840 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 uc_338.9-201ENST00000617424 182 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.74□□□□□ -1.49
SOX4Q06945 AC074101.1-201ENST00000637861 241 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC079776.5-201ENST00000641920 211 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 AC092447.10-201ENST00000620607 1652 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC114774.1-201ENST00000507410 1770 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 CASC19-284ENST00000642142 1868 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX4Q06945 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SOX4Q06945 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SOX4Q06945 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC092070.2-203ENST00000598377 3644 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 AC092125.1-201ENST00000562568 1995 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.73□□□□□ -1.49
SOX4Q06945 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 TCP11X1-202ENST00000622971 1372 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 RNU6-1309P-201ENST00000363305 108 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 RNU6-744P-201ENST00000365557 107 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 Y_RNA.401-201ENST00000383965 117 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 RNU6-1316P-201ENST00000384242 108 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 SNORD116-29-201ENST00000384516 83 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 MT-TR-201ENST00000387439 65 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SOX4Q06945 Y_RNA.605-201ENST00000410577 105 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC113618.1-201ENST00000416747 285 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 PSMD10P3-201ENST00000437000 448 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AL031663.1-201ENST00000437445 219 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC104563.1-201ENST00000476147 376 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 RPSAP50-201ENST00000481955 852 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 SNRPCP2-201ENST00000504370 475 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 RPS4XP20-201ENST00000505751 772 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 TTC39CP1-201ENST00000512513 755 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC107934.1-201ENST00000522215 217 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC5.73□□□□□ -1.49
SOX4Q06945 POLR3GP2-201ENST00000588366 668 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 XIAPP1-201ENST00000603162 600 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 AL391813.2-201ENST00000609113 322 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AC019193.3-201ENST00000609144 554 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AC244107.2-201ENST00000611773 76 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.73□□□□□ -1.49
SOX4Q06945 OR2L1P-202ENST00000641567 1023 ntBASIC5.73□□□□□ -1.49
SOX4Q06945 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms