Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA3P55318 ARL4AP2-201ENST00000507378 601 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA3P55318 ACTR6P1-201ENST00000514311 1104 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 MTCO1P35-201ENST00000515270 228 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 RN7SKP13-201ENST00000515933 244 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AC103843.2-201ENST00000530523 682 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA3P55318 SETP2-201ENST00000553886 926 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 MIR5685-201ENST00000579080 79 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA3P55318 AC073387.2-201ENST00000604797 784 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AL023583.1-201ENST00000607518 1143 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AC131902.3-201ENST00000611767 581 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AL157817.1-201ENST00000614264 790 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2.35□□□□□ -2.03
FOXA3P55318 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA3P55318 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA3P55318 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA3P55318 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA3P55318 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA3P55318 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
FOXA3P55318 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA3P55318 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
FOXA3P55318 AL138880.1-201ENST00000405824 642 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 TCEA1P4-201ENST00000415066 844 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 MRPL50P2-201ENST00000416821 482 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 TEX41-203ENST00000420472 765 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA3P55318 AL139281.1-201ENST00000422120 335 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA3P55318 RPL21P66-201ENST00000426566 466 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA3P55318 ATP5JP1-201ENST00000431631 322 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA3P55318 AL035458.1-201ENST00000433096 585 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA3P55318 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.34□□□□□ -2.03
FOXA3P55318 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 COX6CP2-201ENST00000444980 225 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA3P55318 SUN3-208ENST00000453192 801 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA3P55318 ACTR3P3-201ENST00000480448 893 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 HMGB1P38-201ENST00000490557 577 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 HMGN1P11-201ENST00000508668 303 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 KLHL2P1-201ENST00000508691 521 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 HPRT1P1-201ENST00000509498 657 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA3P55318 RNU6-56P-201ENST00000516986 93 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA3P55318 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA3P55318 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC2.34□□□□□ -2.03
FOXA3P55318 BNIP3P5-201ENST00000562290 498 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC2.34□□□□□ -2.03
FOXA3P55318 AC107982.3-201ENST00000584957 985 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA3P55318 AC083760.1-201ENST00000589621 670 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
FOXA3P55318 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA3P55318 AC090912.3-201ENST00000609775 533 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 MIR6758-201ENST00000620653 63 ntBASIC2.34□□□□□ -2.03
FOXA3P55318 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA3P55318 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA3P55318 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA3P55318 TANK-205ENST00000405852 2155 ntTSL 5 BASIC2.34□□□□□ -2.04
FOXA3P55318 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.34□□□□□ -2.04
FOXA3P55318 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
FOXA3P55318 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
FOXA3P55318 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 AL365440.1-201ENST00000436135 2167 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AP001350.1-201ENST00000601906 1524 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
FOXA3P55318 RNU4-35P-201ENST00000362588 141 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 RNA5SP391-201ENST00000363456 119 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 MIR937-201ENST00000401271 86 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AL049693.1-201ENST00000402760 611 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA3P55318 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA3P55318 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA3P55318 AL592437.1-201ENST00000443781 492 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA3P55318 BUD31P2-201ENST00000449374 300 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AL513343.1-201ENST00000451818 792 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC073387.1-201ENST00000453261 709 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 SBDSP1-204ENST00000453858 737 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 RPL31P53-201ENST00000457065 348 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 NDUFA5P9-201ENST00000472609 340 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 RPL23AP11-201ENST00000475260 469 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC005351.1-201ENST00000511152 786 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA3P55318 RNU1-61P-201ENST00000516107 151 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 RN7SKP277-201ENST00000516895 283 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 MIR2116-201ENST00000517221 80 ntBASIC2.33□□□□□ -2.04
FOXA3P55318 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms