Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL391834.1-201ENST00000609609 560 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 XIST_intron.1-201ENST00000619444 68 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 AC018692.3-201ENST00000623929 123 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 CFTRP2-201ENST00000634304 199 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 AC119674.1-212ENST00000641155 993 ntBASIC2.95□□□□□ -1.94
FOXA1P55317 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA1P55317 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA1P55317 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA1P55317 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA1P55317 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA1P55317 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA1P55317 AC008264.2-201ENST00000610193 3731 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA1P55317 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
FOXA1P55317 U3.15-201ENST00000365398 212 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 RNU6-31P-201ENST00000384388 108 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA1P55317 AL353692.2-201ENST00000407054 335 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AC007390.1-201ENST00000415722 356 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 RPS7P15-201ENST00000415804 584 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA1P55317 AL606490.7-201ENST00000433136 191 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC091862.1-201ENST00000438016 1100 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA1P55317 TVP23BP2-201ENST00000455082 615 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 BTF3P5-201ENST00000457252 467 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 RNU7-27P-201ENST00000459281 62 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AC109925.1-201ENST00000478069 331 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AP004217.1-201ENST00000480579 346 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 RN7SL633P-201ENST00000488974 297 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AL035404.1-201ENST00000497982 568 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AC010627.1-201ENST00000503819 1294 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA1P55317 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA1P55317 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC022784.5-201ENST00000522241 437 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA1P55317 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA1P55317 AL606834.2-201ENST00000602954 668 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AP004372.1-201ENST00000604842 844 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AL096803.3-201ENST00000609032 532 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 AC009318.3-201ENST00000616916 503 ntBASIC2.94□□□□□ -1.94
FOXA1P55317 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA1P55317 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA1P55317 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA1P55317 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 AC138915.3-201ENST00000562908 1389 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
FOXA1P55317 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 RNU6-666P-201ENST00000363499 107 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 SNORD15B-201ENST00000384714 146 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 RNU6-244P-201ENST00000391028 104 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 RPL31P1-201ENST00000398116 372 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 RPL7P8-201ENST00000411964 730 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 AC009965.2-201ENST00000425328 970 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 AC005326.1-201ENST00000429197 123 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.93□□□□□ -1.94
FOXA1P55317 AP002345.1-201ENST00000456493 928 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 RPL7P49-201ENST00000471402 708 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 SNX5P1-201ENST00000505757 1041 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 IGHV3-76-201ENST00000522465 295 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AP000619.3-201ENST00000535634 1127 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC2.93□□□□□ -1.94
FOXA1P55317 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 AC022884.3-201ENST00000579571 248 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AC005242.1-201ENST00000585658 438 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 ABI1P1-201ENST00000603375 1120 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AC011816.2-201ENST00000607089 556 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AC084036.1-201ENST00000609190 508 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 AC015967.1-201ENST00000619893 476 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 AC099506.2-201ENST00000623074 221 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.93□□□□□ -1.94
FOXA1P55317 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXA1P55317 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.93□□□□□ -1.94
FOXA1P55317 AL353743.4-201ENST00000422653 1547 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 SEPT7P7-201ENST00000420492 1301 ntBASIC2.93□□□□□ -1.94
FOXA1P55317 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.92□□□□□ -1.94
FOXA1P55317 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms