Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.4□□□□□ -1.38
RFX1P22670 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC6.4□□□□□ -1.38
RFX1P22670 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
RFX1P22670 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC6.4□□□□□ -1.38
RFX1P22670 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC6.4□□□□□ -1.38
RFX1P22670 RNU4-29P-201ENST00000515943 174 ntBASIC6.4□□□□□ -1.38
RFX1P22670 RNU7-51P-201ENST00000516560 62 ntBASIC6.4□□□□□ -1.38
RFX1P22670 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.4□□□□□ -1.38
RFX1P22670 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC6.4□□□□□ -1.38
RFX1P22670 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.4□□□□□ -1.38
RFX1P22670 AC128657.1-201ENST00000549459 145 ntBASIC6.4□□□□□ -1.38
RFX1P22670 LSM3P2-201ENST00000551246 273 ntBASIC6.4□□□□□ -1.38
RFX1P22670 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.4□□□□□ -1.38
RFX1P22670 AP001029.3-201ENST00000588063 596 ntBASIC6.4□□□□□ -1.38
RFX1P22670 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.4□□□□□ -1.38
RFX1P22670 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
RFX1P22670 RNU6-89P-201ENST00000606519 100 ntBASIC6.4□□□□□ -1.38
RFX1P22670 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.4□□□□□ -1.38
RFX1P22670 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.38
RFX1P22670 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.4□□□□□ -1.38
RFX1P22670 ASNSP3-201ENST00000451989 1306 ntBASIC6.4□□□□□ -1.39
RFX1P22670 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
RFX1P22670 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
RFX1P22670 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
RFX1P22670 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
RFX1P22670 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
RFX1P22670 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.39□□□□□ -1.39
RFX1P22670 AP005435.3-201ENST00000531260 3198 ntBASIC6.39□□□□□ -1.39
RFX1P22670 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.39□□□□□ -1.39
RFX1P22670 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
RFX1P22670 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.39□□□□□ -1.39
RFX1P22670 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 Y_RNA.100-201ENST00000363141 102 ntBASIC6.39□□□□□ -1.39
RFX1P22670 RNU6-339P-201ENST00000384310 107 ntBASIC6.39□□□□□ -1.39
RFX1P22670 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
RFX1P22670 RPL11P3-201ENST00000395256 523 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AL356967.1-201ENST00000406305 431 ntBASIC6.39□□□□□ -1.39
RFX1P22670 RN7SKP17-201ENST00000411242 351 ntBASIC6.39□□□□□ -1.39
RFX1P22670 RN7SKP279-201ENST00000411383 298 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC6.39□□□□□ -1.39
RFX1P22670 AL161631.1-201ENST00000417933 486 ntBASIC6.39□□□□□ -1.39
RFX1P22670 REREP1Y-201ENST00000422655 198 ntBASIC6.39□□□□□ -1.39
RFX1P22670 RPS12P5-201ENST00000423449 371 ntBASIC6.39□□□□□ -1.39
RFX1P22670 MTATP6P16-201ENST00000434543 526 ntBASIC6.39□□□□□ -1.39
RFX1P22670 RPL36AP6-201ENST00000435770 321 ntBASIC6.39□□□□□ -1.39
RFX1P22670 REREP2Y-201ENST00000439103 200 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.39□□□□□ -1.39
RFX1P22670 MTCYBP6-201ENST00000441810 138 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.39□□□□□ -1.39
RFX1P22670 MTND4P19-201ENST00000446659 478 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AC006480.1-201ENST00000449887 378 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC6.39□□□□□ -1.39
RFX1P22670 RPL23AP11-201ENST00000475260 469 ntBASIC6.39□□□□□ -1.39
RFX1P22670 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC6.39□□□□□ -1.39
RFX1P22670 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.39□□□□□ -1.39
RFX1P22670 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.39□□□□□ -1.39
RFX1P22670 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.39□□□□□ -1.39
RFX1P22670 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC6.39□□□□□ -1.39
RFX1P22670 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.39□□□□□ -1.39
RFX1P22670 AL133153.1-201ENST00000557756 303 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.39□□□□□ -1.39
RFX1P22670 AC005668.1-201ENST00000571142 476 ntBASIC6.39□□□□□ -1.39
RFX1P22670 MIR4775-201ENST00000581168 75 ntBASIC6.39□□□□□ -1.39
RFX1P22670 MIR3176-201ENST00000582210 90 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AC020910.2-201ENST00000603635 610 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AC104687.2-201ENST00000604442 342 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AC113139.1-201ENST00000605049 239 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AC021646.1-201ENST00000605469 484 ntBASIC6.39□□□□□ -1.39
RFX1P22670 MIR6793-201ENST00000612376 63 ntBASIC6.39□□□□□ -1.39
RFX1P22670 AP001486.3-201ENST00000615334 372 ntBASIC6.39□□□□□ -1.39
RFX1P22670 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC6.39□□□□□ -1.39
RFX1P22670 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
RFX1P22670 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RFX1P22670 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
RFX1P22670 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.38□□□□□ -1.39
RFX1P22670 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.38□□□□□ -1.39
RFX1P22670 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.38□□□□□ -1.39
RFX1P22670 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
RFX1P22670 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 RNU6-1078P-201ENST00000364522 103 ntBASIC6.38□□□□□ -1.39
RFX1P22670 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 AC016739.1-201ENST00000405359 345 ntBASIC6.38□□□□□ -1.39
RFX1P22670 RNU2-29P-201ENST00000410423 189 ntBASIC6.38□□□□□ -1.39
RFX1P22670 RAB28P1-201ENST00000411517 641 ntBASIC6.38□□□□□ -1.39
RFX1P22670 MTCO2P12-201ENST00000427426 682 ntBASIC6.38□□□□□ -1.39
RFX1P22670 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.38□□□□□ -1.39
RFX1P22670 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RFX1P22670 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC6.38□□□□□ -1.39
RFX1P22670 RPL35AP22-201ENST00000436855 335 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms