Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPL7P8-201ENST00000411964 730 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AL049610.1-201ENST00000423374 372 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC2.92□□□□□ -1.94
COL6A3P12111 AC021205.2-201ENST00000480069 347 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC2.92□□□□□ -1.94
COL6A3P12111 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC2.92□□□□□ -1.94
COL6A3P12111 AC233309.1-201ENST00000619522 751 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AL158062.1-201ENST00000619632 745 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC2.92□□□□□ -1.94
COL6A3P12111 AL356292.1-201ENST00000283110 373 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 RNA5SP322-201ENST00000363617 119 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 RNA5SP39-201ENST00000411245 120 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC2.92□□□□□ -1.94
COL6A3P12111 AC025445.1-201ENST00000502728 300 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC2.92□□□□□ -1.94
COL6A3P12111 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC2.92□□□□□ -1.94
COL6A3P12111 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.92□□□□□ -1.94
COL6A3P12111 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL6A3P12111 BX005019.1-201ENST00000561881 1810 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 RNU6-321P-201ENST00000410912 106 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 CYCSP49-201ENST00000420810 319 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 MTCO3P21-201ENST00000430791 643 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AL162389.1-201ENST00000449233 177 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AL353705.4-201ENST00000449661 238 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AP001025.2-201ENST00000490908 477 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL6A3P12111 RNA5SP154-201ENST00000516193 111 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 RNA5SP282-201ENST00000516355 108 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 FTH1P11-201ENST00000517577 551 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.91□□□□□ -1.94
COL6A3P12111 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
COL6A3P12111 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL6A3P12111 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL6A3P12111 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL6A3P12111 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
COL6A3P12111 Z98742.2-201ENST00000431564 187 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.91□□□□□ -1.94
COL6A3P12111 MRPS18BP2-201ENST00000434310 759 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.91□□□□□ -1.94
COL6A3P12111 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC2.91□□□□□ -1.94
COL6A3P12111 SNORA70.19-201ENST00000516717 90 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 AL359821.1-201ENST00000605519 182 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 snoU13.31-201ENST00000607291 104 ntBASIC2.91□□□□□ -1.94
COL6A3P12111 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL6A3P12111 AC011266.1-201ENST00000624119 3569 ntBASIC2.9□□□□□ -1.94
COL6A3P12111 AC027290.2-201ENST00000623210 18662 ntBASIC2.9□□□□□ -1.94
COL6A3P12111 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
COL6A3P12111 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC2.9□□□□□ -1.94
COL6A3P12111 HIGD1AP2-201ENST00000446367 280 ntBASIC2.9□□□□□ -1.94
COL6A3P12111 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC2.9□□□□□ -1.94
COL6A3P12111 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.9□□□□□ -1.94
COL6A3P12111 AC090525.1-201ENST00000479116 478 ntBASIC2.9□□□□□ -1.94
COL6A3P12111 RPL9P6-201ENST00000492764 598 ntBASIC2.9□□□□□ -1.94
COL6A3P12111 AC008083.2-201ENST00000546707 476 ntBASIC2.9□□□□□ -1.94
COL6A3P12111 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.9□□□□□ -1.94
COL6A3P12111 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
COL6A3P12111 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
COL6A3P12111 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
COL6A3P12111 AC104454.1-201ENST00000421341 1401 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.9□□□□□ -1.95
COL6A3P12111 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC2.9□□□□□ -1.95
COL6A3P12111 AC106785.3-201ENST00000564064 847 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL6A3P12111 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL6A3P12111 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC2.9□□□□□ -1.95
COL6A3P12111 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC2.9□□□□□ -1.95
COL6A3P12111 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC2.9□□□□□ -1.95
COL6A3P12111 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL6A3P12111 MTND2P11-201ENST00000423638 648 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AC073587.1-201ENST00000447093 876 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.9□□□□□ -1.95
COL6A3P12111 OR5G4P-201ENST00000525251 760 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AP000859.1-201ENST00000525536 307 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AC007954.1-201ENST00000554198 494 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.9□□□□□ -1.95
COL6A3P12111 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.9□□□□□ -1.95
COL6A3P12111 RN7SL622P-201ENST00000585292 275 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AL596275.2-204ENST00000641628 552 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AL596275.2-206ENST00000641957 626 ntBASIC2.9□□□□□ -1.95
COL6A3P12111 AC117529.2-201ENST00000512159 2068 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 AC007336.1-201ENST00000576365 3828 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC2.89□□□□□ -1.95
COL6A3P12111 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
COL6A3P12111 MIR613-201ENST00000385248 95 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 RPL7P25-201ENST00000404151 721 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AC096638.1-201ENST00000444678 216 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AC010401.1-201ENST00000463867 348 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.6-201ENST00000603753 252 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.11-201ENST00000604059 253 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.10-201ENST00000604330 253 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AC008162.1-201ENST00000604718 254 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.1-201ENST00000604752 252 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.2-201ENST00000604983 252 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.5-201ENST00000605253 252 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms