Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 AC048346.1-201ENST00000510247 144 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 MTCYBP43-201ENST00000513621 740 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 MTCO1P30-201ENST00000515244 580 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 RNA5SP135-201ENST00000517019 125 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A1P12109 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 MIR3138-201ENST00000585238 82 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.41□□□□□ -1.54
COL6A1P12109 AC022726.1-201ENST00000587475 207 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 AC112230.1-201ENST00000604342 547 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 RNU6-88P-201ENST00000606801 100 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AL354760.1-201ENST00000608357 643 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
COL6A1P12109 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 DUXAP9-208ENST00000622815 614 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AC079228.1-201ENST00000624774 1049 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 AP000843.1-201ENST00000624880 701 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.41□□□□□ -1.54
COL6A1P12109 AL122126.1-201ENST00000546905 1318 ntBASIC5.41□□□□□ -1.54
COL6A1P12109 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
COL6A1P12109 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL6A1P12109 GVINP1-202ENST00000531871 7271 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A1P12109 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.4□□□□□ -1.54
COL6A1P12109 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A1P12109 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A1P12109 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A1P12109 RN7SKP145-201ENST00000363291 303 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL6A1P12109 SNORA70.6-201ENST00000383934 134 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 MTCYBP36-201ENST00000404146 440 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 RNU2-41P-201ENST00000410991 178 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 HMGB3P23-201ENST00000414981 585 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AIMP1P1-201ENST00000418670 937 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 LINC00993-201ENST00000420453 540 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC245054.1-201ENST00000420944 258 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AL513175.1-201ENST00000431492 780 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 CEACAMP1-201ENST00000434624 1035 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC092427.1-201ENST00000439177 601 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 MTND4LP16-201ENST00000440828 295 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC244505.5-201ENST00000443639 207 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.4□□□□□ -1.54
COL6A1P12109 AL162591.2-201ENST00000449634 317 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 PSPHP1-201ENST00000450062 261 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC022034.3-201ENST00000471393 478 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC092989.1-201ENST00000481235 277 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.4□□□□□ -1.54
COL6A1P12109 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.4□□□□□ -1.54
COL6A1P12109 CYCSP29-201ENST00000533731 318 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AL161713.1-201ENST00000555538 145 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 NDUFB4P11-201ENST00000560510 395 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC5.4□□□□□ -1.54
COL6A1P12109 AC009852.2-201ENST00000567898 485 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC034105.4-201ENST00000568304 277 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 FGF7P1-201ENST00000582820 288 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.4□□□□□ -1.54
COL6A1P12109 AC008782.1-201ENST00000603386 430 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC010424.2-201ENST00000607594 443 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 Y_RNA.804-201ENST00000615262 101 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.4□□□□□ -1.54
COL6A1P12109 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.4□□□□□ -1.54
COL6A1P12109 MIR3688-2-201ENST00000636963 87 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 MKKS-204ENST00000639674 192 ntBASIC5.4□□□□□ -1.54
COL6A1P12109 DBF4P1-201ENST00000412976 1892 ntBASIC5.4□□□□□ -1.55
COL6A1P12109 AL592182.3-201ENST00000642132 3304 ntBASIC5.4□□□□□ -1.55
COL6A1P12109 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.4□□□□□ -1.55
COL6A1P12109 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
COL6A1P12109 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.39□□□□□ -1.55
COL6A1P12109 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL6A1P12109 RNU5F-6P-201ENST00000362979 116 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 RNA5SP345-201ENST00000410646 108 ntBASIC5.39□□□□□ -1.55
COL6A1P12109 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.39□□□□□ -1.55
COL6A1P12109 TBCAP2-201ENST00000416175 326 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms