Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC097478.2-201ENST00000610572 514 ntBASIC5.42□□□□□ -1.54
HMGB1P09429 AL596245.1-201ENST00000618994 362 ntBASIC5.42□□□□□ -1.54
HMGB1P09429 PLCE1P1-201ENST00000622094 305 ntBASIC5.42□□□□□ -1.54
HMGB1P09429 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.42□□□□□ -1.54
HMGB1P09429 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HMGB1P09429 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
HMGB1P09429 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.42□□□□□ -1.54
HMGB1P09429 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
HMGB1P09429 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.42□□□□□ -1.54
HMGB1P09429 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HMGB1P09429 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HMGB1P09429 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
HMGB1P09429 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
HMGB1P09429 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.41□□□□□ -1.54
HMGB1P09429 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HMGB1P09429 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
HMGB1P09429 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC5.41□□□□□ -1.54
HMGB1P09429 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
HMGB1P09429 AL133270.1-201ENST00000402635 279 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AL590762.4-201ENST00000425885 253 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AL035246.1-201ENST00000433554 1255 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL359265.2-201ENST00000434367 631 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 MTND3P1-201ENST00000441336 220 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AC234775.1-201ENST00000454247 670 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 MEMO1P3-201ENST00000459811 302 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 RPS27AP1-201ENST00000475545 471 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 RN7SL826P-201ENST00000479724 288 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AC013356.1-201ENST00000489027 564 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC5.41□□□□□ -1.54
HMGB1P09429 RNU6-415P-201ENST00000516252 97 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.41□□□□□ -1.54
HMGB1P09429 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.41□□□□□ -1.54
HMGB1P09429 RN7SL690P-201ENST00000582087 240 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AC091057.2-201ENST00000602594 792 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 BPIFA4P-203ENST00000603168 689 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL450336.1-201ENST00000605180 586 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL158042.1-201ENST00000605338 460 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.41□□□□□ -1.54
HMGB1P09429 AL021707.7-201ENST00000607991 416 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 FAM25E-202ENST00000608562 189 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL049539.1-201ENST00000611964 459 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AL590099.1-201ENST00000615276 138 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 MIR8058-201ENST00000615737 89 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 AP001002.2-201ENST00000625137 386 ntBASIC5.41□□□□□ -1.54
HMGB1P09429 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
HMGB1P09429 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.41□□□□□ -1.54
HMGB1P09429 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
HMGB1P09429 AC010928.1-201ENST00000592477 1447 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
HMGB1P09429 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.54
HMGB1P09429 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
HMGB1P09429 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
HMGB1P09429 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
HMGB1P09429 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
HMGB1P09429 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
HMGB1P09429 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
HMGB1P09429 MIR195-201ENST00000385194 87 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 RNA5SP397-201ENST00000391323 118 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 ATP5F1P4-201ENST00000397288 746 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGB1P09429 RAD23BP1-201ENST00000421404 1227 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 EIF1P3-201ENST00000423841 334 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC017083.1-201ENST00000428093 483 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 USP9YP9-201ENST00000429406 715 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 RPL23AP25-201ENST00000430973 463 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGB1P09429 AC002381.1-201ENST00000447049 280 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGB1P09429 RPL7P18-201ENST00000478965 734 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGB1P09429 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGB1P09429 AC091951.3-201ENST00000504093 246 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC021146.8-201ENST00000507455 733 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGB1P09429 OR7H2P-201ENST00000513483 306 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 MYL12AP1-201ENST00000518490 515 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 HIGD1AP10-201ENST00000527837 282 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 OR6C7P-201ENST00000547875 934 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGB1P09429 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.4□□□□□ -1.54
HMGB1P09429 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC5.4□□□□□ -1.54
HMGB1P09429 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.4□□□□□ -1.54
HMGB1P09429 AL365503.1-201ENST00000605247 905 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AL390240.1-201ENST00000612950 384 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC006386.1-201ENST00000619436 415 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 XIST_intron.1-201ENST00000619444 68 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC091905.2-201ENST00000623143 306 ntBASIC5.4□□□□□ -1.54
HMGB1P09429 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC5.4□□□□□ -1.54
HMGB1P09429 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
HMGB1P09429 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB1P09429 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
HMGB1P09429 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms