Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 MTATP6P22-201ENST00000507369 598 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC109471.1-201ENST00000511631 612 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC022884.3-201ENST00000579571 248 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC022146.1-201ENST00000595307 847 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC133552.5-201ENST00000604266 540 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
LMX1BO60663 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC114781.5-201ENST00000615297 108 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC015540.1-201ENST00000615828 501 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC018755.4-201ENST00000619715 454 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC008443.7-201ENST00000622195 246 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AL359715.5-201ENST00000623431 443 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 ATE1-AS1-202ENST00000636460 506 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 AC099063.3-201ENST00000642066 185 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 LINC01109-201ENST00000603837 3081 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 AC016588.2-201ENST00000632484 3021 ntBASIC3.82□□□□□ -1.8
LMX1BO60663 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LMX1BO60663 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.82□□□□□ -1.8
LMX1BO60663 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
LMX1BO60663 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
LMX1BO60663 Z99496.1-201ENST00000469424 1477 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.81□□□□□ -1.8
LMX1BO60663 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 RNA5SP28-201ENST00000363841 119 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 SNORA4.1-201ENST00000364263 144 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 Y_RNA.359-201ENST00000365498 102 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 SNORA75-201ENST00000384158 137 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 Y_RNA.517-201ENST00000384551 106 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 SNORD116-23-201ENST00000384645 92 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 MIR513A2-201ENST00000385249 127 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RNU6-1300P-201ENST00000391046 108 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 ATP5F1P4-201ENST00000397288 746 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.81□□□□□ -1.8
LMX1BO60663 CYCSP45-201ENST00000402289 315 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AL512430.2-201ENST00000406786 339 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.81□□□□□ -1.8
LMX1BO60663 AL663109.1-201ENST00000411498 844 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 PGBD4P8-201ENST00000412993 562 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 TPT1P2-201ENST00000413105 503 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 AL139095.3-201ENST00000419672 1203 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 C8orf59P1-201ENST00000429930 303 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AP000936.3-201ENST00000438127 255 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 UBE2V1P5-201ENST00000440070 405 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 COX6CP2-201ENST00000444980 225 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 BMI1P1-201ENST00000445879 941 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 YWHAQP9-201ENST00000445891 512 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 ZNF114P1-201ENST00000453500 292 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 TPT1P7-201ENST00000458300 517 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RNU6-956P-201ENST00000458868 103 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 MTND1P16-201ENST00000465177 898 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RPL21P129-201ENST00000491732 478 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RN7SL810P-201ENST00000493031 276 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 AC108471.1-201ENST00000513977 287 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RNA5SP497-201ENST00000516081 97 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RNU6-885P-201ENST00000516607 104 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 RNA5SP135-201ENST00000517019 125 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 SMARCE1P4-201ENST00000523647 241 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 AL139174.1-201ENST00000531489 886 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 AP000873.5-201ENST00000533906 236 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.81□□□□□ -1.8
LMX1BO60663 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 BNIP3P22-201ENST00000593399 556 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC092354.1-201ENST00000606057 376 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC239868.4-201ENST00000608318 671 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC024560.3-201ENST00000608482 349 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms