Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RPL23AP33-201ENST00000442301 452 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RPL7P59-201ENST00000447700 943 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 DNAJC19P1-201ENST00000455312 319 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RPS6P4-201ENST00000494693 758 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC008427.1-201ENST00000503102 655 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC018797.3-201ENST00000513388 1241 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RN7SKP18-201ENST00000516005 275 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RNA5SP143-201ENST00000516936 115 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AP001207.1-201ENST00000524051 481 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL133457.1-201ENST00000564251 987 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AP001542.2-201ENST00000593141 364 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC007566.2-201ENST00000603642 413 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC006065.5-201ENST00000623427 349 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL356121.2-201ENST00000624715 780 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL034408.1-202ENST00000636088 415 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RNU1-18P-201ENST00000363062 164 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RN7SKP44-201ENST00000363602 316 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AL359837.1-201ENST00000381357 287 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RNU1-89P-201ENST00000384592 164 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RN7SKP177-201ENST00000410567 355 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC069218.2-201ENST00000411665 344 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 PTP4A1P7-201ENST00000423476 514 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 SDCBPP2-201ENST00000424643 885 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RPP40P1-201ENST00000426762 456 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC091286.1-201ENST00000431233 461 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC010655.1-201ENST00000449336 292 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 Z99714.1-201ENST00000450463 807 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RPL7P15-201ENST00000461190 712 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RN7SL93P-201ENST00000463035 293 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AP000926.1-201ENST00000479573 241 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC005726.1-201ENST00000494679 427 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AP002812.1-201ENST00000495378 474 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC011352.3-201ENST00000505162 593 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 VWA8P1-201ENST00000510889 176 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 HIGD1AP3-201ENST00000515857 278 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RN7SKP83-201ENST00000516512 178 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 SNORA70.18-201ENST00000516696 98 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC008489.1-201ENST00000524271 483 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 ZNF971P-201ENST00000562068 1249 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC020914.6-201ENST00000594327 272 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 KLKP1-201ENST00000595979 403 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC112503.1-201ENST00000608436 391 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC018645.2-201ENST00000609151 472 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RNU6-1192P-201ENST00000612197 107 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RNU6-489P-201ENST00000618289 107 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 VN1R7P-201ENST00000619242 903 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AL732618.1-201ENST00000623251 301 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC067931.1-201ENST00000624190 671 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AL133412.1-201ENST00000380194 2992 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 AC018529.3-201ENST00000624212 2254 ntBASIC3.67□□□□□ -1.82
LHX3Q9UBR4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LHX3Q9UBR4 MAPK10-373ENST00000641983 6772 ntBASIC3.66□□□□□ -1.82
LHX3Q9UBR4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LHX3Q9UBR4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms