Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MIR554-201ENST00000384874 96 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 MIR134-201ENST00000385258 73 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC007066.1-201ENST00000392902 381 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 RPL22P22-201ENST00000395439 379 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC073264.1-201ENST00000411508 416 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AL096829.2-201ENST00000446582 742 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 RPS20P32-201ENST00000456044 356 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 CDC42P1-201ENST00000456658 548 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 HMGB3P30-201ENST00000457863 606 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 RPL5P23-201ENST00000496040 868 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS35Q96QK1 OR7E13P-201ENST00000526052 910 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC133794.1-201ENST00000602731 914 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AL391497.1-201ENST00000608671 547 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AP004247.3-201ENST00000608682 624 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC138649.5-201ENST00000637456 137 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AP000553.6-201ENST00000641242 118 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AL122126.1-201ENST00000546905 1318 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS35Q96QK1 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 AIMP1P1-201ENST00000418670 937 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS35Q96QK1 IFNNP1-201ENST00000429219 553 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC122718.1-201ENST00000439448 744 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 OR51B8P-201ENST00000449892 769 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 RPL7P15-201ENST00000461190 712 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 RN7SL93P-201ENST00000463035 293 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 RPL9P32-201ENST00000464118 620 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 FAM133DP-201ENST00000464802 691 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 RN7SL542P-201ENST00000467147 294 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 PRDX3P4-201ENST00000470828 747 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC078785.3-201ENST00000476607 425 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC078817.1-201ENST00000492623 435 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 OR6C73P-201ENST00000546432 358 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AL121766.1-201ENST00000547436 487 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 NIFKP8-201ENST00000560500 874 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 MTND4LP25-201ENST00000570218 163 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC084824.5-201ENST00000612009 413 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 AL121772.2-201ENST00000614331 297 ntBASIC3.67□□□□□ -1.82
VPS35Q96QK1 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS35Q96QK1 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 LINC00561-201ENST00000565815 2738 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 ZNF826P-207ENST00000622273 1910 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 RIOK3P1-201ENST00000418778 1528 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 HMGN2P8-201ENST00000391458 268 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC069218.2-201ENST00000411665 344 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 MTND4P22-201ENST00000413116 1169 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 FO393414.1-201ENST00000428697 1184 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC018644.1-201ENST00000429934 551 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 TXNP1-201ENST00000441872 371 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 CDC27P1-201ENST00000445384 715 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 AL133547.1-201ENST00000448546 220 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC099563.1-201ENST00000456086 418 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms