Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MIR7155-201ENST00000615925 56 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC037198.3-201ENST00000616754 526 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC009318.4-201ENST00000620496 486 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 AC015799.1-201ENST00000622996 3122 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SOX4Q06945 ZNF652P1-201ENST00000442420 1309 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SOX4Q06945 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SOX4Q06945 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.75□□□□□ -1.49
SOX4Q06945 AC114546.3-201ENST00000623582 1734 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC011155.1-201ENST00000316512 456 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 RNU6-1297P-201ENST00000384415 104 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 MIR1-2-201ENST00000384961 85 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SOX4Q06945 PPIAP9-201ENST00000403866 498 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX4Q06945 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 AL451054.2-201ENST00000420896 202 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC007283.2-201ENST00000424739 197 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC093655.2-201ENST00000425735 631 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 REG1CP-206ENST00000447469 496 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 SLC25A18P1-201ENST00000449385 454 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 APOOP2-201ENST00000461561 539 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC007547.1-201ENST00000462177 490 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC034222.1-201ENST00000494052 532 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 RNU6-559P-201ENST00000516151 98 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 Y_RNA.718-201ENST00000517110 102 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.75□□□□□ -1.49
SOX4Q06945 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX4Q06945 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 AC017100.2-201ENST00000584628 355 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 VN1R107P-201ENST00000601784 209 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 BBIP1P1-201ENST00000602999 279 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 RPSAP73-201ENST00000614820 330 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX4Q06945 AC015908.5-201ENST00000623289 343 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.75□□□□□ -1.49
SOX4Q06945 AL133216.2-202ENST00000634512 349 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 MTND4LP32-201ENST00000636111 270 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 U6.101-201ENST00000637707 76 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SOX4Q06945 AC100757.1-201ENST00000616872 1835 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 MSL3P1-202ENST00000440028 1468 ntBASIC5.75□□□□□ -1.49
SOX4Q06945 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SOX4Q06945 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SOX4Q06945 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SOX4Q06945 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX4Q06945 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.75□□□□□ -1.49
SOX4Q06945 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 MTCO1P12-201ENST00000414273 1543 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
SOX4Q06945 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX4Q06945 RNU6-984P-201ENST00000363236 109 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 RNA5SP507-201ENST00000363603 121 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 SNORA22B-201ENST00000383876 138 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 RNU6-831P-201ENST00000384548 107 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 RNU6-331P-201ENST00000384724 107 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 MIR765-201ENST00000390226 114 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SOX4Q06945 U3.23-201ENST00000391132 200 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 Y_RNA.615-201ENST00000410769 117 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 RPL23AP27-201ENST00000415161 451 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 CHEK2P3-201ENST00000416118 248 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC127526.1-201ENST00000417526 366 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX4Q06945 NDUFB4P8-201ENST00000435351 367 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AL356276.2-201ENST00000435919 558 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 GAPDHP58-201ENST00000438477 1006 ntBASIC5.74□□□□□ -1.49
SOX4Q06945 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms