Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.6□□□□□ -1.83
CDX1P47902 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.6□□□□□ -1.83
CDX1P47902 RPL18AP17-201ENST00000455326 198 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC026410.2-201ENST00000460281 156 ntBASIC3.6□□□□□ -1.83
CDX1P47902 RPS15AP17-201ENST00000470598 390 ntBASIC3.6□□□□□ -1.83
CDX1P47902 RPL7P38-201ENST00000488396 739 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.6□□□□□ -1.83
CDX1P47902 AC091951.3-201ENST00000504093 246 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC020593.1-201ENST00000507399 299 ntBASIC3.6□□□□□ -1.83
CDX1P47902 XKRY-201ENST00000510392 1100 ntBASIC3.6□□□□□ -1.83
CDX1P47902 RNY4P37-201ENST00000516225 96 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC104986.1-201ENST00000517978 436 ntBASIC3.6□□□□□ -1.83
CDX1P47902 C1GALT1P3-201ENST00000522049 819 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.6□□□□□ -1.83
CDX1P47902 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.6□□□□□ -1.83
CDX1P47902 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CDX1P47902 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.6□□□□□ -1.83
CDX1P47902 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.6□□□□□ -1.83
CDX1P47902 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CDX1P47902 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.6□□□□□ -1.83
CDX1P47902 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.6□□□□□ -1.83
CDX1P47902 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.6□□□□□ -1.83
CDX1P47902 MIR4284-201ENST00000578924 81 ntBASIC3.6□□□□□ -1.83
CDX1P47902 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
CDX1P47902 MIR5096-201ENST00000583713 70 ntBASIC3.6□□□□□ -1.83
CDX1P47902 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.6□□□□□ -1.83
CDX1P47902 AC090181.2-201ENST00000602975 672 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC080013.3-201ENST00000606839 578 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AL713922.2-201ENST00000619384 716 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AP005019.3-201ENST00000620418 560 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC006963.1-201ENST00000624003 1052 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AC231657.1-201ENST00000624313 397 ntBASIC3.6□□□□□ -1.83
CDX1P47902 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.6□□□□□ -1.83
CDX1P47902 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CDX1P47902 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CDX1P47902 AP002907.1-201ENST00000606361 1430 ntBASIC3.6□□□□□ -1.83
CDX1P47902 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.6□□□□□ -1.83
CDX1P47902 ZNF876P-202ENST00000398732 1485 ntBASIC3.6□□□□□ -1.83
CDX1P47902 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CDX1P47902 NOL8P1-201ENST00000508336 3529 ntBASIC3.6□□□□□ -1.83
CDX1P47902 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CDX1P47902 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CDX1P47902 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.59□□□□□ -1.83
CDX1P47902 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.59□□□□□ -1.83
CDX1P47902 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CDX1P47902 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CDX1P47902 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CDX1P47902 RNA5SP258-201ENST00000362750 119 ntBASIC3.59□□□□□ -1.83
CDX1P47902 RNU6-1249P-201ENST00000363237 111 ntBASIC3.59□□□□□ -1.83
CDX1P47902 RNU6-335P-201ENST00000364563 113 ntBASIC3.59□□□□□ -1.83
CDX1P47902 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CDX1P47902 ARL4AP5-201ENST00000404372 599 ntBASIC3.59□□□□□ -1.83
CDX1P47902 Z98941.1-201ENST00000407764 100 ntBASIC3.59□□□□□ -1.83
CDX1P47902 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.59□□□□□ -1.83
CDX1P47902 RHEBP3-201ENST00000411920 351 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 EI24P1-201ENST00000416584 867 ntBASIC3.59□□□□□ -1.83
CDX1P47902 MTCO2P17-201ENST00000424336 677 ntBASIC3.59□□□□□ -1.83
CDX1P47902 NIPA2P1-201ENST00000426223 976 ntBASIC3.59□□□□□ -1.83
CDX1P47902 RPL23AP1-201ENST00000428990 471 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AL365396.1-201ENST00000430854 671 ntBASIC3.59□□□□□ -1.83
CDX1P47902 MRPS18BP2-201ENST00000434310 759 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AF228730.2-201ENST00000438784 848 ntBASIC3.59□□□□□ -1.83
CDX1P47902 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.59□□□□□ -1.83
CDX1P47902 USP9YP34-201ENST00000453983 808 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC087312.1-201ENST00000471411 480 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 RN7SL459P-201ENST00000481078 302 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC114981.1-201ENST00000503897 678 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 AC109458.1-201ENST00000508858 316 ntBASIC3.59□□□□□ -1.83
CDX1P47902 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 OR5AK1P-201ENST00000524837 922 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.59□□□□□ -1.83
CDX1P47902 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.59□□□□□ -1.83
CDX1P47902 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 HSPE1P3-201ENST00000559254 309 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC105129.1-201ENST00000560250 297 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC009712.1-201ENST00000564938 316 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 AC061975.8-201ENST00000587058 721 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.59□□□□□ -1.83
CDX1P47902 AC008745.1-201ENST00000604064 271 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC006270.3-201ENST00000605967 1036 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC008966.2-201ENST00000606157 453 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AL133243.1-201ENST00000614487 366 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC018755.4-201ENST00000619715 454 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 MIR4278-201ENST00000636094 69 ntBASIC3.59□□□□□ -1.83
CDX1P47902 AC006927.4-201ENST00000639187 543 ntBASIC3.59□□□□□ -1.83
CDX1P47902 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.59□□□□□ -1.83
CDX1P47902 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CDX1P47902 AL390862.1-201ENST00000635467 1469 ntBASIC3.59□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms