Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN9P43378 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 AC121247.2-201ENST00000604776 136 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC245297.2-201ENST00000610119 565 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC093783.1-201ENST00000612976 329 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 RNU6-156P-201ENST00000621869 107 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AP000676.3-201ENST00000623299 569 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC008785.1-201ENST00000624475 456 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PTPN9P43378 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PTPN9P43378 RNA5SP443-201ENST00000363083 132 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 RNA5SP391-201ENST00000363456 119 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 RNU6-921P-201ENST00000384361 107 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 RN7SKP182-201ENST00000410772 298 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 RPL23AP26-201ENST00000412728 464 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 FAR2P2-201ENST00000413041 594 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL807761.1-201ENST00000417622 171 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 USP9YP26-201ENST00000421008 661 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL365338.1-201ENST00000422282 858 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL022400.1-201ENST00000423946 935 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 SDCBPP2-201ENST00000424643 885 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 FAR2P4-202ENST00000425399 584 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 RPL23AP46-201ENST00000438548 490 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 H2AFZP6-201ENST00000444403 394 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 APOOP2-201ENST00000461561 539 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 NAA50-206ENST00000493454 964 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 PRELID3BP7-201ENST00000503606 469 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC147055.4-201ENST00000504399 745 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 OR51K1P-201ENST00000510214 950 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 PARP4P3-201ENST00000510265 317 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AC018797.3-201ENST00000513388 1241 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AC099522.1-202ENST00000514718 367 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 OR5AK1P-201ENST00000524837 922 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC135628.1-201ENST00000568867 534 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC011477.5-201ENST00000586571 259 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 VN1R92P-201ENST00000598511 928 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 DUXAP11-201ENST00000603858 526 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 AL136981.2-201ENST00000617319 734 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.38□□□□□ -1.71
PTPN9P43378 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 AC098679.5-201ENST00000624394 571 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 MIR3653-201ENST00000625572 110 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PTPN9P43378 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.38□□□□□ -1.71
PTPN9P43378 MTND5P28-201ENST00000438005 1594 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.38□□□□□ -1.71
PTPN9P43378 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PTPN9P43378 ZNF37BP-203ENST00000452306 1352 ntBASIC4.38□□□□□ -1.71
PTPN9P43378 ERCC6-202ENST00000374127 1782 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PTPN9P43378 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
PTPN9P43378 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 RNA5SP52-201ENST00000362448 134 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.37□□□□□ -1.71
PTPN9P43378 AC011233.1-201ENST00000422812 283 ntBASIC4.37□□□□□ -1.71
PTPN9P43378 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN9P43378 RPL30P3-201ENST00000424262 333 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms