Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC2.58□□□□□ -2
HLA-DMBP28068 RNU4-31P-201ENST00000384211 141 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 RNU2-21P-201ENST00000410368 188 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 RNA5SP107-201ENST00000411358 122 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 RPS3AP25-201ENST00000411660 793 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 RANP4-201ENST00000413361 655 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AC245052.5-201ENST00000416320 649 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AC245291.1-201ENST00000419501 328 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 MTND2P16-201ENST00000419987 799 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC2.58□□□□□ -2
HLA-DMBP28068 FAR1P1-201ENST00000427163 934 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 RPL34P26-201ENST00000445636 354 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 RPL21P23-201ENST00000446654 460 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 snoU13.22-201ENST00000459428 104 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 FABP5P12-201ENST00000515543 389 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 OR8L1P-201ENST00000534005 955 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.58□□□□□ -2
HLA-DMBP28068 AC004024.1-201ENST00000549244 247 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 AL121594.4-201ENST00000556211 1196 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.58□□□□□ -2
HLA-DMBP28068 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
HLA-DMBP28068 AC020914.6-201ENST00000594327 272 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.58□□□□□ -2
HLA-DMBP28068 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 MIR7851-201ENST00000610611 160 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 AC015967.1-201ENST00000619893 476 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.58□□□□□ -2
HLA-DMBP28068 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.58□□□□□ -2
HLA-DMBP28068 AL079305.1-201ENST00000623159 3008 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HLA-DMBP28068 MTND4P31-201ENST00000425607 1343 ntBASIC2.58□□□□□ -2
HLA-DMBP28068 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.58□□□□□ -2
HLA-DMBP28068 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.58□□□□□ -2
HLA-DMBP28068 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.58□□□□□ -2
HLA-DMBP28068 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
HLA-DMBP28068 AL672296.1-201ENST00000427780 2158 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC2.57□□□□□ -2
HLA-DMBP28068 MAPK10-362ENST00000641864 4484 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HLA-DMBP28068 RNA5SP383-201ENST00000362934 120 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 RNA5SP50-201ENST00000363731 107 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 RNA5SP387-201ENST00000364226 106 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 RNA5SP72-201ENST00000364442 117 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.57□□□□□ -2
HLA-DMBP28068 RNU6-452P-201ENST00000384406 107 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC012498.1-201ENST00000424037 437 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.57□□□□□ -2
HLA-DMBP28068 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC2.57□□□□□ -2
HLA-DMBP28068 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC008264.1-201ENST00000447612 367 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.57□□□□□ -2
HLA-DMBP28068 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC2.57□□□□□ -2
HLA-DMBP28068 HMGN1P18-201ENST00000457642 277 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC2.57□□□□□ -2
HLA-DMBP28068 RN7SL293P-201ENST00000481765 281 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 RPL31P13-201ENST00000484151 370 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.57□□□□□ -2
HLA-DMBP28068 KCTD9P5-201ENST00000504141 1170 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 MTND4LP22-201ENST00000508209 276 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 RN7SKP13-201ENST00000515933 244 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC103843.2-201ENST00000530523 682 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.57□□□□□ -2
HLA-DMBP28068 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.57□□□□□ -2
HLA-DMBP28068 CCNG2P1-201ENST00000549521 1000 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.57□□□□□ -2
HLA-DMBP28068 AC244258.1-201ENST00000637553 1071 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 AL392088.2-201ENST00000637607 285 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.57□□□□□ -2
HLA-DMBP28068 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.57□□□□□ -2
HLA-DMBP28068 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
HLA-DMBP28068 AC004972.1-201ENST00000623934 2209 ntBASIC2.57□□□□□ -2
HLA-DMBP28068 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.56□□□□□ -2
HLA-DMBP28068 AL365440.1-201ENST00000436135 2167 ntBASIC2.56□□□□□ -2
HLA-DMBP28068 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.56□□□□□ -2
HLA-DMBP28068 SNORA70.4-201ENST00000365509 134 ntBASIC2.56□□□□□ -2
HLA-DMBP28068 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HLA-DMBP28068 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
HLA-DMBP28068 MIR34B-201ENST00000385076 84 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms