Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RNA5SP374-201ENST00000362939 125 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 SNORD6-201ENST00000365444 73 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 SNORA48.5-201ENST00000391143 135 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 TAF9BP1-201ENST00000396646 746 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 BX323014.1-201ENST00000412876 237 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 RANP4-201ENST00000413361 655 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 Z99755.1-201ENST00000414048 380 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 GTF2IP23-201ENST00000423746 351 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 HMGB1P5-202ENST00000451497 985 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AC006539.3-201ENST00000454258 129 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AC112198.1-201ENST00000505369 1220 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AC110794.1-201ENST00000505816 425 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 HMGB1P46-201ENST00000520062 610 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AC135507.2-201ENST00000612443 309 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AL354976.1-201ENST00000613843 387 ntBASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
RPAP1Q9BWH6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 RNU6-185P-201ENST00000384421 107 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 Y_RNA.500-201ENST00000384466 111 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC105402.1-201ENST00000413336 545 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 MTCO1P52-201ENST00000433928 531 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC114878.1-201ENST00000441166 358 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 RPL23AP67-201ENST00000465341 474 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 SMARCE1P4-201ENST00000523647 241 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 MIR548Y-201ENST00000582739 110 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC079791.1-201ENST00000605356 973 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC073657.2-201ENST00000605661 303 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC011816.2-201ENST00000607089 556 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AL713922.2-201ENST00000619384 716 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC017071.1-201ENST00000564407 2204 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 AC096656.1-201ENST00000623826 1364 ntBASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
RPAP1Q9BWH6 GNG5P1-201ENST00000255500 204 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 U3.26-201ENST00000391236 204 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 Z86062.1-201ENST00000406773 777 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC009965.2-201ENST00000425328 970 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 SEC63P1-201ENST00000425785 1258 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 MTND2P21-201ENST00000436242 1042 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 RSL24D1P3-201ENST00000449255 495 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 HMGB1P26-201ENST00000452520 628 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 IFNWP4-201ENST00000453148 294 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 RPL37P3-201ENST00000456825 293 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 RPL23AP14-201ENST00000468281 468 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 OR4R3P-201ENST00000525084 838 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC125494.3-201ENST00000602759 455 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC124312.4-201ENST00000605533 310 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC242628.1-201ENST00000606810 391 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC009318.3-201ENST00000616916 503 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 MIR6852-201ENST00000621699 66 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 AC024023.1-201ENST00000624530 922 ntBASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.06□□□□□ -1.76
RPAP1Q9BWH6 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 AL357075.1-201ENST00000404107 726 ntBASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 MTND4P11-201ENST00000417020 1058 ntBASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 PTP4A1P5-201ENST00000420305 455 ntBASIC4.05□□□□□ -1.76
RPAP1Q9BWH6 TRIM60P13-201ENST00000432350 1283 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms