Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RNU6-956P-201ENST00000458868 103 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC006499.6-201ENST00000511169 607 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 IGKV1-32-201ENST00000519290 311 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC060788.1-201ENST00000521318 469 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 HIGD1AP6-201ENST00000521833 279 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AP000873.5-201ENST00000533906 236 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC027807.1-201ENST00000559921 996 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC018552.3-201ENST00000567416 561 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC138915.2-201ENST00000569776 97 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 RN7SL690P-201ENST00000582087 240 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MIR4480-201ENST00000582492 71 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MIR3611-201ENST00000584484 83 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC078795.2-201ENST00000602835 1252 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC025946.2-201ENST00000603398 234 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MTCYBP22-201ENST00000603788 447 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC091946.2-201ENST00000606105 291 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 Z98200.1-201ENST00000607298 470 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC116447.1-201ENST00000613153 453 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC099842.1-201ENST00000619919 596 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MKKS-204ENST00000639674 192 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC099063.3-201ENST00000642066 185 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC107982.1-201ENST00000507171 1300 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ZNF962P-201ENST00000443465 3140 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 LINC02471-203ENST00000641941 4752 ntBASIC4.09□□□□□ -1.76
CLIP4Q8N3C7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
CLIP4Q8N3C7 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
CLIP4Q8N3C7 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
CLIP4Q8N3C7 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
CLIP4Q8N3C7 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CLIP4Q8N3C7 AC022031.1-201ENST00000585985 2593 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RNU4-21P-201ENST00000362802 126 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RNU6-984P-201ENST00000363236 109 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SNORD113.2-201ENST00000364166 89 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SNORA70F-201ENST00000384142 135 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 HSPD1P16-201ENST00000402302 394 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 NCSTNP1-201ENST00000406229 144 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SNORA11B-201ENST00000408175 129 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SNORA74C-2-201ENST00000411179 201 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RN7SKP142-201ENST00000411236 328 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC068533.2-201ENST00000411872 306 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RPS20P14-201ENST00000412545 360 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SNRPFP1-201ENST00000414761 252 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 BOLA3P4-201ENST00000418151 400 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AL513175.1-201ENST00000431492 780 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AL359265.2-201ENST00000434367 631 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 MTCO2P3-201ENST00000442543 421 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 COX6CP2-201ENST00000444980 225 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RPL36AP33-201ENST00000450395 310 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 ZNF114P1-201ENST00000453500 292 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RNA5SP228-201ENST00000516232 133 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AP001207.1-201ENST00000524051 481 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC107016.1-201ENST00000550463 337 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 CYP4A43P-201ENST00000568156 121 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 RPL23AP97-201ENST00000568955 471 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 MIR4270-201ENST00000581799 70 ntBASIC4.08□□□□□ -1.76
CLIP4Q8N3C7 VN1R92P-201ENST00000598511 928 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms