Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC010095.1-201ENST00000443543 144 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 OR5H3P-201ENST00000502817 919 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 SETP12-201ENST00000514068 805 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 HSPD1P16-201ENST00000402302 394 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 RPL32P35-201ENST00000415214 394 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC234781.4-201ENST00000419384 244 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC010468.1-201ENST00000461022 817 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC073476.4-201ENST00000628409 72 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 RPS7P13-201ENST00000413955 498 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AC013410.1-201ENST00000436223 1232 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AL513124.1-201ENST00000450410 614 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 FDX1P2-201ENST00000450769 375 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 HMGN1P18-201ENST00000457642 277 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AC004801.2-202ENST00000463559 283 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 RPS27AP18-201ENST00000515536 459 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AP002812.4-201ENST00000532139 286 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 AC099506.2-201ENST00000623074 221 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC88AQ3V6T2 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.81
CCDC88AQ3V6T2 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC006539.3-201ENST00000454258 129 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC117440.1-201ENST00000474107 571 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 TRBV8-2-201ENST00000475637 270 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AL365503.1-201ENST00000605247 905 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AL365400.2-201ENST00000605604 902 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC015813.6-201ENST00000624409 5808 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 OR1S2-201ENST00000302592 978 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 SNORD15B-201ENST00000384714 146 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 SNORD109B-201ENST00000458961 67 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 SNORD109A-201ENST00000459128 67 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC106872.2-201ENST00000494303 480 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 CYCSP39-201ENST00000565821 309 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC009948.4-201ENST00000604692 675 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AC078899.5-201ENST00000612475 178 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 AP003499.2-201ENST00000624100 483 ntBASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC88AQ3V6T2 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 ELL2P4-201ENST00000446870 1376 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 AC017002.4-201ENST00000604721 1525 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 NPM1P11-201ENST00000417106 855 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 FTH1P1-201ENST00000437933 532 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 HMGB3P11-201ENST00000440127 604 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 RFPL4AP3-201ENST00000515267 345 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 PRELID3BP8-201ENST00000604148 295 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 MTND5P23-201ENST00000430812 1655 ntBASIC3.7□□□□□ -1.82
CCDC88AQ3V6T2 AC019155.1-201ENST00000382242 574 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 RPL7P25-201ENST00000404151 721 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AC013470.3-201ENST00000420252 1194 ntBASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC88AQ3V6T2 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms