Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN9P43378 OR4A15-201ENST00000314706 1035 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AC011155.1-201ENST00000316512 456 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 RNA5SP513-201ENST00000364648 118 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
PTPN9P43378 SNORA56-201ENST00000383966 129 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AL590084.2-201ENST00000401481 382 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 RNU4-25P-201ENST00000410569 230 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 TPT1P2-201ENST00000413105 503 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AC004022.2-201ENST00000413824 193 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 RPS3AP9-201ENST00000417027 792 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 TIMM9P2-201ENST00000419324 266 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN9P43378 UBE2V1P1-201ENST00000430836 445 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 RPL23AP89-201ENST00000439324 255 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 RAD23BP3-201ENST00000454157 1152 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN9P43378 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 SETP14-201ENST00000497538 873 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN9P43378 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN9P43378 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 MYL12AP1-201ENST00000518490 515 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 RAB9BP1-201ENST00000519581 626 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 SLC2A13P1-201ENST00000531560 322 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN9P43378 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN9P43378 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC125611.1-201ENST00000549563 229 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN9P43378 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN9P43378 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.4□□□□□ -1.71
PTPN9P43378 SULT1C2P1-202ENST00000562418 459 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 MIR4284-201ENST00000578924 81 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN9P43378 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PTPN9P43378 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC015813.4-201ENST00000610469 179 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AC064801.1-201ENST00000612025 407 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AL139418.1-201ENST00000613613 177 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AC114781.5-201ENST00000615297 108 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 AC011944.2-201ENST00000624440 683 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AP000843.1-201ENST00000624880 701 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 AP003399.1-201ENST00000637534 361 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
PTPN9P43378 AP000526.1-201ENST00000603308 1388 ntBASIC4.4□□□□□ -1.71
PTPN9P43378 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 RNU6-1293P-201ENST00000384077 107 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC009518.2-201ENST00000418056 731 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.39□□□□□ -1.71
PTPN9P43378 AL593851.1-201ENST00000426171 157 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC234781.2-201ENST00000426370 994 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 BTF3P10-201ENST00000433415 495 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 YWHAZP8-201ENST00000436935 731 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.39□□□□□ -1.71
PTPN9P43378 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 SLC31A1P1-201ENST00000451221 567 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PTPN9P43378 AL122001.1-201ENST00000457027 370 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC4.39□□□□□ -1.71
PTPN9P43378 RNA5SP246-201ENST00000458909 119 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 RN7SL481P-201ENST00000477764 299 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC091167.1-201ENST00000492017 396 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 IFITM8P-201ENST00000522529 394 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC022790.1-201ENST00000522872 204 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 OR5M7P-201ENST00000526140 972 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 OR4A12P-201ENST00000530847 918 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AC105233.3-201ENST00000531125 744 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.39□□□□□ -1.71
PTPN9P43378 AC063950.1-201ENST00000552036 308 ntBASIC4.39□□□□□ -1.71
PTPN9P43378 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.39□□□□□ -1.71
PTPN9P43378 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms