Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 AC087897.1-201ENST00000550134 156 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC9P31274 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC9P31274 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 AC063944.3-201ENST00000609969 533 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AC233309.1-201ENST00000619522 751 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXC9P31274 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXC9P31274 AL732372.2-225ENST00000642124 456 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC9P31274 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXC9P31274 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC9P31274 RNU6-317P-201ENST00000384031 107 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AC092745.2-202ENST00000411880 369 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 BTF3P8-201ENST00000414577 526 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 LIPT1P1-201ENST00000415870 1186 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC9P31274 MTCO3P21-201ENST00000430791 643 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC9P31274 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 AL031663.1-201ENST00000437445 219 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXC9P31274 AL031313.1-201ENST00000448435 256 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC9P31274 METTL15P1-201ENST00000481421 1045 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC9P31274 PHBP14-201ENST00000512887 367 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 FTH1P11-201ENST00000517577 551 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AC104417.1-201ENST00000523974 751 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 LRRC6P1-201ENST00000532188 885 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AGGF1P5-201ENST00000567900 919 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 AL160237.3-201ENST00000604114 1013 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AC112220.2-201ENST00000605513 533 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AL365400.2-201ENST00000605604 902 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 PART1_2.1-201ENST00000612397 250 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXC9P31274 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 AC008993.2-201ENST00000631744 806 ntBASIC4.66□□□□□ -1.66
HOXC9P31274 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXC9P31274 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
HOXC9P31274 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HOXC9P31274 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXC9P31274 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.65□□□□□ -1.66
HOXC9P31274 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXC9P31274 BX005019.1-201ENST00000561881 1810 ntBASIC4.65□□□□□ -1.66
HOXC9P31274 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.65□□□□□ -1.66
HOXC9P31274 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
HOXC9P31274 OTUD4P1-201ENST00000237841 3067 ntBASIC4.65□□□□□ -1.66
HOXC9P31274 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXC9P31274 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 RNA5SP42-201ENST00000364278 115 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC9P31274 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXC9P31274 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC9P31274 MIR525-201ENST00000384978 85 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 Y_RNA.578-201ENST00000390903 88 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXC9P31274 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC9P31274 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC9P31274 AC091862.1-201ENST00000438016 1100 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 CBX1P4-201ENST00000439415 457 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 Z75741.1-201ENST00000446793 314 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 HMGB3P22-202ENST00000451823 572 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 DNAJC19P8-201ENST00000452887 259 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 OFD1P3Y-201ENST00000453312 783 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 AL354710.1-201ENST00000453641 246 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 RNU7-140P-201ENST00000459546 60 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXC9P31274 AC069499.1-201ENST00000489433 509 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXC9P31274 AC008837.1-201ENST00000511513 412 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 AC010342.1-201ENST00000514047 877 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC9P31274 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXC9P31274 OR10V3P-201ENST00000525712 725 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 NDUFS5P6-201ENST00000529136 295 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXC9P31274 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXC9P31274 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXC9P31274 AC068714.1-201ENST00000559623 800 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 AL158211.1-201ENST00000566763 763 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 AC106782.4-201ENST00000568264 210 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXC9P31274 KLKP1-201ENST00000595979 403 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 EIF1P6-201ENST00000600054 334 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXC9P31274 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXC9P31274 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
HOXC9P31274 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
HOXC9P31274 AL450326.2-201ENST00000421913 1962 ntBASIC4.65□□□□□ -1.67
HOXC9P31274 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXC9P31274 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms