Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC087272.1-201ENST00000523624 533 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA9P31269 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXA9P31269 ZNF192P1-203ENST00000565888 810 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 MIR4325-201ENST00000583049 90 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 MTCO2P22-201ENST00000603246 681 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA9P31269 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA9P31269 AL355802.4-201ENST00000607635 548 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 AC048347.1-201ENST00000624621 427 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 AL163152.1-201ENST00000642001 374 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA9P31269 MTND4P21-201ENST00000453886 1357 ntBASIC3.6□□□□□ -1.83
HOXA9P31269 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
HOXA9P31269 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
HOXA9P31269 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA9P31269 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA9P31269 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.83
HOXA9P31269 RNU6-883P-201ENST00000384597 107 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 MIR128-1-201ENST00000384921 82 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 SNORA48.5-201ENST00000391143 135 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 RNA5SP498-201ENST00000411342 120 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC017079.2-201ENST00000416102 485 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AC002075.2-201ENST00000425207 252 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC091862.1-201ENST00000438016 1100 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AC017099.1-201ENST00000448261 1028 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA9P31269 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC008083.2-201ENST00000546707 476 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA9P31269 MIR5047-201ENST00000579212 100 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA9P31269 AC121761.2-201ENST00000617300 689 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 AC073592.7-201ENST00000623659 507 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 CR392039.4-201ENST00000624968 501 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA9P31269 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA9P31269 ZNF33CP-201ENST00000432492 2030 ntBASIC3.59□□□□□ -1.83
HOXA9P31269 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXA9P31269 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 OTUD4P1-201ENST00000237841 3067 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 HMGB1P13-201ENST00000406019 642 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 RNU4-47P-201ENST00000410876 114 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC007390.1-201ENST00000415722 356 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA9P31269 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXA9P31269 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
HOXA9P31269 AL606490.7-201ENST00000433136 191 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA9P31269 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA9P31269 AL031663.1-201ENST00000437445 219 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA9P31269 AL691517.1-201ENST00000440833 1235 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 XKRY2-201ENST00000442362 1093 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC245517.2-201ENST00000442890 346 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AL627224.1-201ENST00000448334 444 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA9P31269 TPMTP4-201ENST00000450749 678 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXA9P31269 NPM1P17-201ENST00000479221 602 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXA9P31269 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA9P31269 AC021146.7-201ENST00000509604 775 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA9P31269 AC005921.1-201ENST00000510589 286 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 HMGB1P47-201ENST00000511281 589 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA9P31269 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXA9P31269 RN7SKP83-201ENST00000516512 178 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXA9P31269 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXA9P31269 AC073657.2-201ENST00000605661 303 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC006946.3-201ENST00000609791 756 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXA9P31269 RPL23AP61-201ENST00000623642 466 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA9P31269 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA9P31269 AC024341.1-201ENST00000526444 1552 ntBASIC3.58□□□□□ -1.84
HOXA9P31269 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
HOXA9P31269 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXA9P31269 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
HOXA9P31269 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXA9P31269 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms