Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DPRXP4-201ENST00000578053 568 ntBASIC2.99□□□□□ -1.93
COL6A3P12111 AC022149.2-201ENST00000621061 203 ntBASIC2.99□□□□□ -1.93
COL6A3P12111 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A3P12111 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A3P12111 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A3P12111 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A3P12111 SNORA36C-201ENST00000384289 132 ntBASIC2.99□□□□□ -1.93
COL6A3P12111 AC011753.1-201ENST00000451001 220 ntBASIC2.99□□□□□ -1.93
COL6A3P12111 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC2.99□□□□□ -1.93
COL6A3P12111 AC020633.1-201ENST00000468439 2247 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC2.98□□□□□ -1.93
COL6A3P12111 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.98□□□□□ -1.93
COL6A3P12111 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.98□□□□□ -1.93
COL6A3P12111 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 RPL31P45-201ENST00000419532 356 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 ELOCP8-201ENST00000439309 332 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 ELOCP15-201ENST00000442090 332 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 RPS12P18-201ENST00000442381 270 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.98□□□□□ -1.93
COL6A3P12111 AC117522.3-201ENST00000507974 584 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.98□□□□□ -1.93
COL6A3P12111 AC079228.1-201ENST00000624774 1049 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC2.98□□□□□ -1.93
COL6A3P12111 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
COL6A3P12111 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 SNORD114-1-201ENST00000362705 72 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC2.98□□□□□ -1.93
COL6A3P12111 MTCO3P16-201ENST00000454456 754 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AC015917.1-201ENST00000579654 510 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AP005136.1-201ENST00000579765 429 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AC138627.1-204ENST00000641894 765 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC2.98□□□□□ -1.93
COL6A3P12111 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC2.98□□□□□ -1.93
COL6A3P12111 MIR93-201ENST00000385024 80 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 SNORA31.21-201ENST00000517180 77 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A3P12111 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.98□□□□□ -1.93
COL6A3P12111 uc_338.1-201ENST00000612113 180 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 VN1R9P-201ENST00000614184 867 ntBASIC2.98□□□□□ -1.93
COL6A3P12111 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL6A3P12111 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.97□□□□□ -1.93
COL6A3P12111 Y_RNA.374-201ENST00000365606 101 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 RNA5SP146-201ENST00000410743 123 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.97□□□□□ -1.93
COL6A3P12111 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC2.97□□□□□ -1.93
COL6A3P12111 AC092809.1-201ENST00000441469 474 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 AC108860.1-201ENST00000484521 383 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 OR4G11P-201ENST00000492842 939 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.97□□□□□ -1.93
COL6A3P12111 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC2.97□□□□□ -1.93
COL6A3P12111 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL6A3P12111 AC027514.1-201ENST00000588561 1603 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
COL6A3P12111 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
COL6A3P12111 RNA5SP325-201ENST00000363756 130 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 MORF4L1P6-201ENST00000418771 268 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 YWHAEP5-201ENST00000431545 765 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 AC011242.1-201ENST00000433596 1158 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 CST9LP2-201ENST00000437612 320 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 TRBV1-201ENST00000476502 284 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
COL6A3P12111 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.97□□□□□ -1.93
COL6A3P12111 AP000790.1-201ENST00000528891 737 ntBASIC2.97□□□□□ -1.93
COL6A3P12111 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.97□□□□□ -1.93
COL6A3P12111 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
COL6A3P12111 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL6A3P12111 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
COL6A3P12111 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC2.96□□□□□ -1.93
COL6A3P12111 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC2.96□□□□□ -1.93
COL6A3P12111 MIR27B-201ENST00000385129 97 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 PTP4A1P5-201ENST00000420305 455 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC2.96□□□□□ -1.94
COL6A3P12111 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
COL6A3P12111 TRAV11-201ENST00000539512 339 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A3P12111 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC2.96□□□□□ -1.94
COL6A3P12111 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A3P12111 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A3P12111 MTND4P26-201ENST00000415971 1359 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A3P12111 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A3P12111 HSPA8P1-201ENST00000425843 1833 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 AL590084.1-201ENST00000407885 387 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.96□□□□□ -1.94
COL6A3P12111 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.96□□□□□ -1.94
COL6A3P12111 AC092013.1-201ENST00000438795 332 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC2.96□□□□□ -1.94
COL6A3P12111 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A3P12111 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC2.96□□□□□ -1.94
COL6A3P12111 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A3P12111 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A3P12111 NRBF2P1-201ENST00000587407 859 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A3P12111 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms