Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC002487.1-201ENST00000604565 994 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC245389.1-201ENST00000605141 529 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC099785.1-201ENST00000605697 437 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC124016.2-201ENST00000610058 665 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 MIR486-1-201ENST00000612171 68 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC006133.1-201ENST00000617106 264 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC007275.1-201ENST00000621243 671 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AL138955.1-201ENST00000622881 1040 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AL138960.2-201ENST00000625145 535 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC068620.4-201ENST00000636730 1182 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC106858.1-201ENST00000637497 429 ntBASIC3.72□□□□□ -1.81
LHX3Q9UBR4 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
LHX3Q9UBR4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
LHX3Q9UBR4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.71□□□□□ -1.81
LHX3Q9UBR4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
LHX3Q9UBR4 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.71□□□□□ -1.81
LHX3Q9UBR4 DCAF13P1-201ENST00000495256 1330 ntBASIC3.71□□□□□ -1.81
LHX3Q9UBR4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
LHX3Q9UBR4 MFSD8-236ENST00000641509 4050 ntBASIC3.71□□□□□ -1.81
LHX3Q9UBR4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 OR1L1-202ENST00000373686 1083 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 RNU6-444P-201ENST00000383988 108 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 RNU6-356P-201ENST00000384140 107 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 ATP5F1P4-201ENST00000397288 746 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 MTCO2P31-201ENST00000402702 684 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 HSPE1P8-201ENST00000406997 288 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 ATP5A1P2-201ENST00000412323 255 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 LIPT1P1-201ENST00000415870 1186 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC245054.1-201ENST00000420944 258 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 RPS12P5-201ENST00000423449 371 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 OR51AB1P-201ENST00000429046 620 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 GOT2P5-201ENST00000433995 546 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 ARF4P4-201ENST00000439608 520 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AL645939.1-201ENST00000453429 797 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC091860.1-201ENST00000505723 432 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 HMGN1P11-201ENST00000508668 303 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 TRAV15-201ENST00000556680 249 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC105227.2-201ENST00000615075 605 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AL109620.1-201ENST00000618738 1197 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.71□□□□□ -1.82
LHX3Q9UBR4 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.71□□□□□ -1.82
LHX3Q9UBR4 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 SNORA62.3-201ENST00000365110 153 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 PTMAP2-201ENST00000397627 327 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 SFR1P1-201ENST00000403720 688 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 IFNNP1-201ENST00000429219 553 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 MTCYBP15-201ENST00000433123 1127 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC239367.2-201ENST00000447309 705 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 RPS3AP46-201ENST00000448352 682 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AL121877.1-201ENST00000453704 622 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 HMGN3P1-201ENST00000453847 193 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC146507.1-201ENST00000468335 354 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC087879.1-201ENST00000474343 374 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC104619.4-201ENST00000510773 249 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms