Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SNORA9-201ENST00000384215 133 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 HMGN2P8-201ENST00000391458 268 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC073264.1-201ENST00000411508 416 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 MTCO1P43-201ENST00000431831 488 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RPS3AP12-201ENST00000443616 753 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 PLGLA-201ENST00000465668 449 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RPL23AP55-201ENST00000498163 452 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC008565.1-201ENST00000509046 885 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 HMGN1P15-201ENST00000513870 295 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RN7SKP18-201ENST00000516005 275 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RN7SKP244-201ENST00000516513 307 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC010735.1-201ENST00000567305 1026 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 MIR3922-201ENST00000585192 84 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC092354.2-201ENST00000607786 514 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AL159169.3-201ENST00000608871 561 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC091953.5-201ENST00000622919 233 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 U6.105-201ENST00000637379 88 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 MTCO1P12-201ENST00000414273 1543 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
TM9SF3Q9HD45 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
TM9SF3Q9HD45 ELL2P4-201ENST00000446870 1376 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC016716.1-201ENST00000265882 708 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 RNA5SP72-201ENST00000364442 117 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 TATDN1P1-201ENST00000414123 891 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 MTND4P24-201ENST00000424002 397 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 RPL21P66-201ENST00000426566 466 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 TRIM60P13-201ENST00000432350 1283 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 UBE2V1P5-201ENST00000440070 405 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 ELOCP13-201ENST00000443934 329 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 RPS26P56-201ENST00000444468 240 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC008280.2-201ENST00000455473 307 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 SYPL1P1-201ENST00000473622 768 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 RN7SL293P-201ENST00000481765 281 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AL591424.2-201ENST00000617023 128 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.77□□□□□ -1.81
TM9SF3Q9HD45 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 AP001350.1-201ENST00000601906 1524 ntBASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 RNA5SP51-201ENST00000364750 119 ntBASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 HMGB3P18-201ENST00000406327 590 ntBASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 MTND3P20-201ENST00000407663 186 ntBASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.76□□□□□ -1.81
TM9SF3Q9HD45 KRR1P1-201ENST00000419430 803 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms