Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 CYCSP35-201ENST00000451978 304 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 RPL32P34-201ENST00000486380 400 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 SOD1P3-201ENST00000518682 454 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 OR4R3P-201ENST00000525084 838 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 OR4U1P-201ENST00000554958 912 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC055876.1-202ENST00000567053 138 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC022884.3-201ENST00000579571 248 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC007179.3-201ENST00000604976 235 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AL391834.1-201ENST00000609609 560 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC243654.2-201ENST00000612843 443 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AL354976.1-201ENST00000613843 387 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC116563.2-201ENST00000624751 535 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AC091152.2-201ENST00000591628 2569 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 AL353743.1-202ENST00000431724 1695 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 MTND5P1-201ENST00000445440 1375 ntBASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC112Q8NEF3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AL645937.1-201ENST00000641739 1652 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 SNORD3H-201ENST00000384486 214 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 MIR483-201ENST00000385070 76 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 GAPDHP27-201ENST00000447427 1020 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 IGHV3-76-201ENST00000522465 295 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 GTF2IP22-201ENST00000554443 182 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AC139769.3-201ENST00000618383 175 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 MTND5P24-201ENST00000438892 1767 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AL118496.1-201ENST00000440201 1812 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 AC021755.1-201ENST00000559747 1447 ntBASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
CCDC112Q8NEF3 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 Y_RNA.62-201ENST00000362840 99 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RNA5SP197-201ENST00000363357 119 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RNA5SP167-201ENST00000365461 116 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RPL17P50-201ENST00000396131 546 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RPS3AP25-201ENST00000411660 793 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 SYF2P2-201ENST00000417620 583 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 NEK4P1-201ENST00000433383 879 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 HMGB3P6-201ENST00000444896 598 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 PRDX3P3-201ENST00000447765 522 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RPS20P32-201ENST00000456044 356 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC108860.1-201ENST00000484521 383 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 WBP1LP4-201ENST00000505043 344 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 MTATP6P22-201ENST00000507369 598 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC147055.1-201ENST00000509261 750 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 HMGN1P15-201ENST00000513870 295 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RN7SKP116-201ENST00000516902 319 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 CCNG2P1-201ENST00000549521 1000 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 OR4H12P-201ENST00000556269 907 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC010591.1-201ENST00000603941 649 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AL356490.1-201ENST00000623079 479 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC091903.1-201ENST00000624322 454 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 AC092159.4-201ENST00000624944 550 ntBASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC112Q8NEF3 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC112Q8NEF3 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
CCDC112Q8NEF3 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.59□□□□□ -1.84
CCDC112Q8NEF3 MAPK10-362ENST00000641864 4484 ntBASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 RNU6-532P-201ENST00000384318 107 ntBASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 RNA5SP229-201ENST00000410809 99 ntBASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC112Q8NEF3 AC013404.1-201ENST00000413068 249 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms