Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 AC018555.1-201ENST00000567548 1980 ntBASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
CLIP4Q8N3C7 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC093535.2-201ENST00000624769 2326 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC125257.1-201ENST00000560400 2930 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC090017.1-201ENST00000548612 1779 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AL672167.1-206ENST00000356293 943 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 Y_RNA.18-201ENST00000362461 102 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RNA5SP307-201ENST00000362863 116 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 SNORD116-23-201ENST00000384645 92 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RNU6-272P-201ENST00000411028 104 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RNU6-603P-201ENST00000411403 107 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 PIGPP2-201ENST00000411569 458 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 TPMTP3-201ENST00000411928 735 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC234782.4-201ENST00000417646 1048 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 Z99497.1-201ENST00000421282 135 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 OR5BE1P-201ENST00000425977 939 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RPS26P47-201ENST00000427219 348 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RPEP2-201ENST00000432149 701 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 ELOCP18-201ENST00000434209 337 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 LYPLA1P1-201ENST00000434514 622 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RPL23AP35-201ENST00000451906 501 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 KATNBL1P6-201ENST00000453433 915 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RPS27AP17-201ENST00000463344 455 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC146944.2-203ENST00000502493 354 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC139495.1-202ENST00000513164 354 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC022146.1-201ENST00000595307 847 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC128687.1-201ENST00000605304 619 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC006338.2-201ENST00000616864 791 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 MIR6891-201ENST00000618788 93 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AL049536.1-201ENST00000625043 744 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 OR5BE1P-202ENST00000641168 1176 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 AC027287.1-201ENST00000553115 1453 ntBASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CLIP4Q8N3C7 USP9YP4-201ENST00000424401 1745 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MTND5P24-201ENST00000438892 1767 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC015813.6-201ENST00000624409 5808 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 RNU6-492P-201ENST00000363035 104 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ATP5F1P4-201ENST00000397288 746 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC004022.2-201ENST00000413824 193 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC007394.1-201ENST00000421941 531 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 MTCO2P34-201ENST00000421994 607 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC073335.1-201ENST00000427776 363 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 BRWD1P3-201ENST00000428816 390 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 ACTR3P2-201ENST00000439585 1257 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 UBE2V1P3-201ENST00000439651 417 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 OR6C5P-201ENST00000452388 923 ntBASIC4.09□□□□□ -1.75
CLIP4Q8N3C7 RPL37P3-201ENST00000456825 293 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms