Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPL21P134-201ENST00000453468 483 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 RFC5P1-201ENST00000454419 874 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 VN1R40P-201ENST00000455196 941 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 RPS5P7-201ENST00000456664 608 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 PNPLA4P1-201ENST00000458328 305 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 MTND1P16-201ENST00000465177 898 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 RN7SL542P-201ENST00000467147 294 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC108145.1-201ENST00000503770 153 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC005832.3-201ENST00000537929 631 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 SNORD39.3-201ENST00000584451 71 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC020910.3-201ENST00000603701 874 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AL357094.1-201ENST00000603845 844 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AL049634.3-201ENST00000604968 457 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC097478.2-201ENST00000610572 514 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AL359535.1-201ENST00000612100 1087 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC017037.3-201ENST00000625016 472 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AL592148.3-201ENST00000608771 2646 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AC006971.1-201ENST00000407916 4486 ntBASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
PDLIM3Q53GG5 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 SNORD113.2-201ENST00000364166 89 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 RPS26P8-201ENST00000393490 348 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC092634.6-201ENST00000418558 192 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 UBTFL3-201ENST00000418934 1024 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC092447.3-201ENST00000426027 686 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC005345.1-201ENST00000431868 217 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 PHBP16-201ENST00000446318 950 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 SNORA59A-201ENST00000459326 152 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC090142.1-201ENST00000465776 462 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 UBTFL6-201ENST00000477929 1024 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 RN7SL132P-201ENST00000478131 296 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC078817.1-201ENST00000492623 435 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 SNORA31.9-201ENST00000516429 84 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 RN7SKP277-201ENST00000516895 283 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 RNU4-60P-201ENST00000517239 135 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC006270.2-201ENST00000578523 652 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC008751.2-201ENST00000597885 980 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC008739.3-201ENST00000603262 127 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 MIR7154-201ENST00000620673 73 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AL512506.2-201ENST00000624472 458 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 AC135352.1-201ENST00000506173 1418 ntBASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PDLIM3Q53GG5 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
PDLIM3Q53GG5 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms