Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 MRPS36P5-201ENST00000551909 298 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 HIGD1AP17-201ENST00000554576 276 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC053481.4-201ENST00000583164 216 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 MIR6867-201ENST00000610636 67 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC012314.7-201ENST00000619693 93 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AP000484.1-201ENST00000620067 1252 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 CDR1-202ENST00000625883 1485 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AC104454.1-201ENST00000421341 1401 ntBASIC4.28□□□□□ -1.72
COL28A1Q2UY09 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.28□□□□□ -1.72
COL28A1Q2UY09 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 Y_RNA.25-201ENST00000362528 102 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RNU1-83P-201ENST00000363426 164 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 Y_RNA.311-201ENST00000365068 96 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 Y_RNA.408-201ENST00000383987 102 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 MIR649-201ENST00000384843 97 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 TAF9BP1-201ENST00000396646 746 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC006960.1-201ENST00000419980 153 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 SDCBPP2-201ENST00000424643 885 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC096632.1-201ENST00000427395 310 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 NPM1P34-201ENST00000428821 893 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RPL31P54-201ENST00000429803 370 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RPL36P19-201ENST00000430744 301 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RPS6P15-201ENST00000431996 751 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AL008629.1-201ENST00000438615 184 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC104651.2-201ENST00000447549 528 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC108463.1-201ENST00000450258 347 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC005726.1-201ENST00000494679 427 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC105185.1-201ENST00000518705 535 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 MTND2P38-201ENST00000522536 667 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC009712.1-201ENST00000564938 316 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC145350.1-201ENST00000567426 208 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC079171.1-201ENST00000568788 914 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 MTND6P33-201ENST00000571794 183 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RN7SL703P-201ENST00000578485 302 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 VN1R82P-201ENST00000601481 356 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC025811.1-201ENST00000604312 472 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AL592221.1-201ENST00000605266 382 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC120349.3-201ENST00000624377 529 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AC012442.3-202ENST00000636742 206 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 FAM157B-203ENST00000639350 358 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 AL049555.1-201ENST00000562834 1933 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 EOGT-210ENST00000615922 1931 ntBASIC4.27□□□□□ -1.73
COL28A1Q2UY09 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL28A1Q2UY09 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AC005539.1-201ENST00000443768 1479 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RNU6-216P-201ENST00000363282 104 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RNU5A-2P-201ENST00000384337 116 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 RSL24D1P4-201ENST00000400938 484 ntBASIC4.26□□□□□ -1.73
COL28A1Q2UY09 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms