Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.66□□□□□ -1.66
CIITAP33076 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.66□□□□□ -1.66
CIITAP33076 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC4.66□□□□□ -1.66
CIITAP33076 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.66□□□□□ -1.66
CIITAP33076 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.66□□□□□ -1.66
CIITAP33076 CYP4A43P-201ENST00000568156 121 ntBASIC4.66□□□□□ -1.66
CIITAP33076 MTCYBP33-201ENST00000575007 1130 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC005951.1-201ENST00000576706 485 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.66□□□□□ -1.66
CIITAP33076 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.66□□□□□ -1.66
CIITAP33076 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.66□□□□□ -1.66
CIITAP33076 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CIITAP33076 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.66□□□□□ -1.66
CIITAP33076 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.66□□□□□ -1.66
CIITAP33076 AC092653.1-201ENST00000608509 531 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC072039.2-201ENST00000608883 439 ntBASIC4.66□□□□□ -1.66
CIITAP33076 SNX18P1Y-201ENST00000616231 511 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC079248.2-201ENST00000623779 326 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC112484.5-201ENST00000624189 228 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC092608.3-201ENST00000625017 386 ntBASIC4.66□□□□□ -1.66
CIITAP33076 AC068724.3-201ENST00000625906 87 ntBASIC4.66□□□□□ -1.66
CIITAP33076 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CIITAP33076 MIR4278-201ENST00000636094 69 ntBASIC4.66□□□□□ -1.66
CIITAP33076 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CIITAP33076 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CIITAP33076 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CIITAP33076 SGO1P2-201ENST00000429458 1589 ntBASIC4.65□□□□□ -1.66
CIITAP33076 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
CIITAP33076 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
CIITAP33076 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.65□□□□□ -1.66
CIITAP33076 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.66
CIITAP33076 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.65□□□□□ -1.66
CIITAP33076 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.65□□□□□ -1.66
CIITAP33076 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CIITAP33076 RNU6-619P-201ENST00000365146 108 ntBASIC4.65□□□□□ -1.67
CIITAP33076 Y_RNA.408-201ENST00000383987 102 ntBASIC4.65□□□□□ -1.67
CIITAP33076 SNORD116-9-201ENST00000384000 95 ntBASIC4.65□□□□□ -1.67
CIITAP33076 SNORD116-3-201ENST00000384287 95 ntBASIC4.65□□□□□ -1.67
CIITAP33076 SNORD116-7-201ENST00000384404 95 ntBASIC4.65□□□□□ -1.67
CIITAP33076 SNORD116-5-201ENST00000384462 95 ntBASIC4.65□□□□□ -1.67
CIITAP33076 SNORA37-201ENST00000384504 129 ntBASIC4.65□□□□□ -1.67
CIITAP33076 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.65□□□□□ -1.67
CIITAP33076 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.65□□□□□ -1.67
CIITAP33076 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC4.65□□□□□ -1.67
CIITAP33076 AC006960.1-201ENST00000419980 153 ntBASIC4.65□□□□□ -1.67
CIITAP33076 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.65□□□□□ -1.67
CIITAP33076 AL358472.1-201ENST00000431295 329 ntBASIC4.65□□□□□ -1.67
CIITAP33076 HLA-N-201ENST00000437516 135 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC092809.1-201ENST00000441469 474 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC118469.1-201ENST00000442943 488 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.65□□□□□ -1.67
CIITAP33076 HSFY6P-201ENST00000445573 403 ntBASIC4.65□□□□□ -1.67
CIITAP33076 COX6CP18-201ENST00000448769 222 ntBASIC4.65□□□□□ -1.67
CIITAP33076 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CIITAP33076 RPL21P134-201ENST00000453468 483 ntBASIC4.65□□□□□ -1.67
CIITAP33076 BX248409.1-201ENST00000455497 255 ntBASIC4.65□□□□□ -1.67
CIITAP33076 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.65□□□□□ -1.67
CIITAP33076 RPL38P1-201ENST00000460914 211 ntBASIC4.65□□□□□ -1.67
CIITAP33076 RPL5P30-201ENST00000465511 891 ntBASIC4.65□□□□□ -1.67
CIITAP33076 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CIITAP33076 AC068587.1-201ENST00000483613 781 ntBASIC4.65□□□□□ -1.67
CIITAP33076 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.65□□□□□ -1.67
CIITAP33076 FTH1P24-201ENST00000503502 462 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC006499.6-201ENST00000511169 607 ntBASIC4.65□□□□□ -1.67
CIITAP33076 MTCO1P35-201ENST00000515270 228 ntBASIC4.65□□□□□ -1.67
CIITAP33076 RNU7-143P-201ENST00000516781 65 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.65□□□□□ -1.67
CIITAP33076 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.65□□□□□ -1.67
CIITAP33076 AC074029.1-201ENST00000552531 1044 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.65□□□□□ -1.67
CIITAP33076 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.65□□□□□ -1.67
CIITAP33076 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.65□□□□□ -1.67
CIITAP33076 AC007599.1-201ENST00000568688 1174 ntBASIC4.65□□□□□ -1.67
CIITAP33076 MIR3160-1-201ENST00000577972 85 ntBASIC4.65□□□□□ -1.67
CIITAP33076 MIR5684-201ENST00000585074 65 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.65□□□□□ -1.67
CIITAP33076 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
CIITAP33076 AC115621.1-201ENST00000604653 858 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC106791.2-201ENST00000604680 391 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC124312.4-201ENST00000605533 310 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC010857.1-201ENST00000606398 594 ntBASIC4.65□□□□□ -1.67
CIITAP33076 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.65□□□□□ -1.67
CIITAP33076 AC055839.1-201ENST00000634467 498 ntBASIC4.65□□□□□ -1.67
CIITAP33076 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.65□□□□□ -1.67
CIITAP33076 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CIITAP33076 ZNF542P-204ENST00000482727 1305 ntBASIC4.65□□□□□ -1.67
CIITAP33076 DCAF13P3-201ENST00000561147 1334 ntBASIC4.65□□□□□ -1.67
CIITAP33076 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
CIITAP33076 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CIITAP33076 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
CIITAP33076 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.65□□□□□ -1.67
CIITAP33076 AC025263.3-201ENST00000622965 1396 ntBASIC4.65□□□□□ -1.67
CIITAP33076 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CIITAP33076 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
CIITAP33076 AC007390.2-201ENST00000606229 3803 ntBASIC4.64□□□□□ -1.67
CIITAP33076 AC119744.1-201ENST00000454746 1715 ntBASIC4.64□□□□□ -1.67
CIITAP33076 SNORA60-201ENST00000362396 134 ntBASIC4.64□□□□□ -1.67
CIITAP33076 RNA5SP515-201ENST00000364570 118 ntBASIC4.64□□□□□ -1.67
CIITAP33076 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CIITAP33076 MIR16-1-201ENST00000385271 89 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms