Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RAB28P3-201ENST00000448325 597 ntBASIC3.66□□□□□ -1.82
COL5A3P25940 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.66□□□□□ -1.82
COL5A3P25940 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.66□□□□□ -1.82
COL5A3P25940 SNORA31.21-201ENST00000517180 77 ntBASIC3.66□□□□□ -1.82
COL5A3P25940 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.66□□□□□ -1.82
COL5A3P25940 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.66□□□□□ -1.82
COL5A3P25940 LINC00901.1-201ENST00000617252 152 ntBASIC3.66□□□□□ -1.82
COL5A3P25940 AL590808.1-201ENST00000618696 141 ntBASIC3.66□□□□□ -1.82
COL5A3P25940 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.66□□□□□ -1.82
COL5A3P25940 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL5A3P25940 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL5A3P25940 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL5A3P25940 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.65□□□□□ -1.82
COL5A3P25940 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.65□□□□□ -1.82
COL5A3P25940 AL139413.1-201ENST00000421309 217 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 Z93242.1-201ENST00000427102 353 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 AL162389.1-201ENST00000449233 177 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.65□□□□□ -1.82
COL5A3P25940 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.65□□□□□ -1.82
COL5A3P25940 AC091544.1-201ENST00000484702 348 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 AC111000.2-201ENST00000507775 550 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 OR6R2P-201ENST00000609216 300 ntBASIC3.65□□□□□ -1.82
COL5A3P25940 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.65□□□□□ -1.83
COL5A3P25940 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
COL5A3P25940 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL5A3P25940 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL5A3P25940 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL5A3P25940 OR52B1P-201ENST00000316506 909 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
COL5A3P25940 FABP5P12-201ENST00000515543 389 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.64□□□□□ -1.83
COL5A3P25940 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.64□□□□□ -1.83
COL5A3P25940 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.64□□□□□ -1.83
COL5A3P25940 Z82195.1-201ENST00000604558 398 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.64□□□□□ -1.83
COL5A3P25940 AC027287.1-201ENST00000553115 1453 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.64□□□□□ -1.83
COL5A3P25940 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.64□□□□□ -1.83
COL5A3P25940 MRPL50P2-201ENST00000416821 482 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 AC073508.1-201ENST00000428866 656 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 AC133473.1-201ENST00000455173 299 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 AC090525.1-201ENST00000479116 478 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 RPS6P4-201ENST00000494693 758 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.64□□□□□ -1.83
COL5A3P25940 RMST_8.1-201ENST00000610287 165 ntBASIC3.64□□□□□ -1.83
COL5A3P25940 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
COL5A3P25940 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A3P25940 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A3P25940 ELL2P4-201ENST00000446870 1376 ntBASIC3.63□□□□□ -1.83
COL5A3P25940 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A3P25940 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A3P25940 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
COL5A3P25940 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.63□□□□□ -1.83
COL5A3P25940 RPS12P5-201ENST00000423449 371 ntBASIC3.63□□□□□ -1.83
COL5A3P25940 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A3P25940 AC007563.3-201ENST00000433233 371 ntBASIC3.63□□□□□ -1.83
COL5A3P25940 TXNP1-201ENST00000441872 371 ntBASIC3.63□□□□□ -1.83
COL5A3P25940 AP000936.2-201ENST00000447151 681 ntBASIC3.63□□□□□ -1.83
COL5A3P25940 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
COL5A3P25940 AL035413.2-201ENST00000604801 525 ntBASIC3.63□□□□□ -1.83
COL5A3P25940 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.63□□□□□ -1.83
COL5A3P25940 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A3P25940 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL5A3P25940 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.63□□□□□ -1.83
COL5A3P25940 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.63□□□□□ -1.83
COL5A3P25940 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A3P25940 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A3P25940 RPL32P35-201ENST00000415214 394 ntBASIC3.62□□□□□ -1.83
COL5A3P25940 HMGB3P6-201ENST00000444896 598 ntBASIC3.62□□□□□ -1.83
COL5A3P25940 AL121877.1-201ENST00000453704 622 ntBASIC3.62□□□□□ -1.83
COL5A3P25940 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.62□□□□□ -1.83
COL5A3P25940 AP002812.4-201ENST00000532139 286 ntBASIC3.62□□□□□ -1.83
COL5A3P25940 AL157394.1-201ENST00000562983 1224 ntBASIC3.62□□□□□ -1.83
COL5A3P25940 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.62□□□□□ -1.83
COL5A3P25940 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.62□□□□□ -1.83
COL5A3P25940 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.62□□□□□ -1.83
COL5A3P25940 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A3P25940 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL5A3P25940 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC3.62□□□□□ -1.83
COL5A3P25940 OR56A5-201ENST00000340110 738 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A3P25940 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A3P25940 RNU6-237P-201ENST00000515985 71 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.61□□□□□ -1.83
COL5A3P25940 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A3P25940 AC107016.2-201ENST00000547968 190 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.61□□□□□ -1.83
COL5A3P25940 AC007954.1-201ENST00000554198 494 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AC141257.3-201ENST00000572906 215 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AL356490.1-201ENST00000623079 479 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A3P25940 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A3P25940 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL5A3P25940 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A3P25940 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.61□□□□□ -1.83
COL5A3P25940 AL445529.1-201ENST00000398713 389 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 RSL24D1P4-201ENST00000400938 484 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms