Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
USF1P22415 MIR491-201ENST00000384877 84 ntBASIC3.16□□□□□ -1.9
USF1P22415 MIR183-201ENST00000384958 110 ntBASIC3.16□□□□□ -1.9
USF1P22415 HLFP1-201ENST00000402375 499 ntBASIC3.16□□□□□ -1.9
USF1P22415 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.16□□□□□ -1.9
USF1P22415 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.16□□□□□ -1.9
USF1P22415 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.16□□□□□ -1.9
USF1P22415 MORF4L1P7-201ENST00000426038 703 ntBASIC3.16□□□□□ -1.9
USF1P22415 CKS1BP5-201ENST00000434172 273 ntBASIC3.16□□□□□ -1.9
USF1P22415 Z74696.2-201ENST00000436514 498 ntBASIC3.16□□□□□ -1.9
USF1P22415 AC009263.1-201ENST00000441193 1239 ntBASIC3.16□□□□□ -1.9
USF1P22415 TPRKBP1-201ENST00000456243 481 ntBASIC3.16□□□□□ -1.9
USF1P22415 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.16□□□□□ -1.9
USF1P22415 PLGLA-201ENST00000465668 449 ntBASIC3.16□□□□□ -1.9
USF1P22415 RN7SL293P-201ENST00000481765 281 ntBASIC3.16□□□□□ -1.9
USF1P22415 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.16□□□□□ -1.9
USF1P22415 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.16□□□□□ -1.9
USF1P22415 TMEM248P1-201ENST00000510579 951 ntBASIC3.16□□□□□ -1.9
USF1P22415 AC074250.1-201ENST00000511117 192 ntBASIC3.16□□□□□ -1.9
USF1P22415 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.16□□□□□ -1.9
USF1P22415 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.16□□□□□ -1.9
USF1P22415 HIGD1AP10-201ENST00000527837 282 ntBASIC3.16□□□□□ -1.9
USF1P22415 AC079791.1-201ENST00000605356 973 ntBASIC3.16□□□□□ -1.9
USF1P22415 BNIP3P19-201ENST00000605397 577 ntBASIC3.16□□□□□ -1.9
USF1P22415 AC018926.3-201ENST00000618841 406 ntBASIC3.16□□□□□ -1.9
USF1P22415 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.16□□□□□ -1.9
USF1P22415 U6.105-201ENST00000637379 88 ntBASIC3.16□□□□□ -1.9
USF1P22415 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
USF1P22415 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
USF1P22415 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
USF1P22415 MTCO1P24-201ENST00000515438 1558 ntBASIC3.16□□□□□ -1.9
USF1P22415 TNPO1P3-201ENST00000436471 2662 ntBASIC3.16□□□□□ -1.9
USF1P22415 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.15□□□□□ -1.9
USF1P22415 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
USF1P22415 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
USF1P22415 SEC63P2-201ENST00000503863 1939 ntBASIC3.15□□□□□ -1.9
USF1P22415 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 ENSAP3-201ENST00000312710 333 ntBASIC3.15□□□□□ -1.91
USF1P22415 SNORA9-201ENST00000384215 133 ntBASIC3.15□□□□□ -1.91
USF1P22415 PTMAP5-201ENST00000393073 333 ntBASIC3.15□□□□□ -1.91
USF1P22415 EI24P2-201ENST00000397776 1076 ntBASIC3.15□□□□□ -1.91
USF1P22415 MTCO3P31-201ENST00000405526 789 ntBASIC3.15□□□□□ -1.91
USF1P22415 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.15□□□□□ -1.91
USF1P22415 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.15□□□□□ -1.91
USF1P22415 AC007390.1-201ENST00000415722 356 ntBASIC3.15□□□□□ -1.91
USF1P22415 RPS7P15-201ENST00000415804 584 ntBASIC3.15□□□□□ -1.91
USF1P22415 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.15□□□□□ -1.91
USF1P22415 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.15□□□□□ -1.91
USF1P22415 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 OR51AB1P-201ENST00000429046 620 ntBASIC3.15□□□□□ -1.91
USF1P22415 IFNNP1-201ENST00000429219 553 ntBASIC3.15□□□□□ -1.91
USF1P22415 PTP4A1P3-201ENST00000433661 420 ntBASIC3.15□□□□□ -1.91
USF1P22415 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 CYCSP43-201ENST00000438233 310 ntBASIC3.15□□□□□ -1.91
USF1P22415 AL138799.3-201ENST00000438968 350 ntBASIC3.15□□□□□ -1.91
USF1P22415 Z77249.1-201ENST00000444622 1175 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC098824.1-201ENST00000453565 980 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC008280.2-201ENST00000455473 307 ntBASIC3.15□□□□□ -1.91
USF1P22415 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 SNORD105B-201ENST00000458770 79 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC010307.1-201ENST00000467206 836 ntBASIC3.15□□□□□ -1.91
USF1P22415 SNRPGP3-201ENST00000469405 227 ntBASIC3.15□□□□□ -1.91
USF1P22415 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.15□□□□□ -1.91
USF1P22415 TMED11P-201ENST00000479478 690 ntBASIC3.15□□□□□ -1.91
USF1P22415 HMGB3P14-201ENST00000494195 599 ntBASIC3.15□□□□□ -1.91
USF1P22415 DSTNP2-201ENST00000504533 515 ntBASIC3.15□□□□□ -1.91
USF1P22415 WBP1LP4-201ENST00000505043 344 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC004069.2-201ENST00000505438 1114 ntBASIC3.15□□□□□ -1.91
USF1P22415 BTF3L4P4-201ENST00000506381 449 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.15□□□□□ -1.91
USF1P22415 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 AC008885.2-201ENST00000509506 930 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC021146.1-201ENST00000511202 716 ntBASIC3.15□□□□□ -1.91
USF1P22415 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 AC023141.12-201ENST00000512399 199 ntBASIC3.15□□□□□ -1.91
USF1P22415 MTCO1P30-201ENST00000515244 580 ntBASIC3.15□□□□□ -1.91
USF1P22415 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.15□□□□□ -1.91
USF1P22415 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.15□□□□□ -1.91
USF1P22415 AL450270.1-201ENST00000606160 391 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.15□□□□□ -1.91
USF1P22415 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
USF1P22415 MIR8058-201ENST00000615737 89 ntBASIC3.15□□□□□ -1.91
USF1P22415 AC017104.5-201ENST00000637647 639 ntBASIC3.15□□□□□ -1.91
USF1P22415 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.15□□□□□ -1.91
USF1P22415 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USF1P22415 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
USF1P22415 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
USF1P22415 AC000367.1-201ENST00000452711 1766 ntBASIC3.15□□□□□ -1.91
USF1P22415 PRO1804-201ENST00000623780 2050 ntBASIC3.15□□□□□ -1.91
USF1P22415 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
USF1P22415 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.14□□□□□ -1.91
USF1P22415 AC006504.1-201ENST00000562493 3666 ntBASIC3.14□□□□□ -1.91
USF1P22415 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USF1P22415 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
USF1P22415 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
USF1P22415 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USF1P22415 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms