Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 YES1-203ENST00000577961 4554 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A3P12111 AL135786.1-201ENST00000415892 214 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AC116337.1-201ENST00000509680 687 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 NDUFA5P6-201ENST00000542110 379 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AC011270.1-201ENST00000558606 583 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.02□□□□□ -1.93
COL6A3P12111 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 FAM35DP-201ENST00000323387 2712 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 RNU1-108P-201ENST00000362556 161 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 Y_RNA.122-201ENST00000363331 96 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AC010469.1-201ENST00000463864 576 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AC017037.1-201ENST00000508460 471 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A3P12111 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A3P12111 AC015871.2-201ENST00000603605 948 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AC090897.3-201ENST00000636973 1157 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
COL6A3P12111 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
COL6A3P12111 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.02□□□□□ -1.93
COL6A3P12111 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A3P12111 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.02□□□□□ -1.93
COL6A3P12111 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A3P12111 AC074367.1-201ENST00000438685 1125 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A3P12111 HMGB3P14-201ENST00000494195 599 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A3P12111 AC022884.3-201ENST00000579571 248 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.02□□□□□ -1.93
COL6A3P12111 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.02□□□□□ -1.93
COL6A3P12111 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 CTSLP2-204ENST00000629029 392 ntBASIC3.02□□□□□ -1.93
COL6A3P12111 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.02□□□□□ -1.93
COL6A3P12111 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 AL031595.2-201ENST00000624215 19071 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.01□□□□□ -1.93
COL6A3P12111 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
COL6A3P12111 RHOT1P2-201ENST00000366423 333 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 NPM1P24-201ENST00000428039 894 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.01□□□□□ -1.93
COL6A3P12111 AL139395.1-201ENST00000603662 160 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 AC093673.2-201ENST00000609674 331 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.01□□□□□ -1.93
COL6A3P12111 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.01□□□□□ -1.93
COL6A3P12111 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC3.01□□□□□ -1.93
COL6A3P12111 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.01□□□□□ -1.93
COL6A3P12111 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 AC126124.2-201ENST00000413542 321 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 AL137014.1-201ENST00000420490 1226 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 HSPE1P16-201ENST00000426640 348 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 NIPA2P5-201ENST00000452282 464 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 MIR449C-201ENST00000516047 92 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 OR5BN1P-201ENST00000532955 829 ntBASIC3.01□□□□□ -1.93
COL6A3P12111 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A3P12111 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
COL6A3P12111 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3□□□□□ -1.93
COL6A3P12111 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A3P12111 HMGN2P8-201ENST00000391458 268 ntBASIC3□□□□□ -1.93
COL6A3P12111 ANP32BP2-201ENST00000454525 545 ntBASIC3□□□□□ -1.93
COL6A3P12111 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC3□□□□□ -1.93
COL6A3P12111 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3□□□□□ -1.93
COL6A3P12111 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
COL6A3P12111 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3□□□□□ -1.93
COL6A3P12111 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3□□□□□ -1.93
COL6A3P12111 TP73-AS1.1-201ENST00000611447 161 ntBASIC3□□□□□ -1.93
COL6A3P12111 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3□□□□□ -1.93
COL6A3P12111 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC3□□□□□ -1.93
COL6A3P12111 OR4G1P-202ENST00000641173 1788 ntBASIC3□□□□□ -1.93
COL6A3P12111 SNORD74.4-201ENST00000364129 80 ntBASIC3□□□□□ -1.93
COL6A3P12111 DPH3P2-201ENST00000422618 250 ntBASIC3□□□□□ -1.93
COL6A3P12111 RPL23AP15-201ENST00000450202 459 ntBASIC3□□□□□ -1.93
COL6A3P12111 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3□□□□□ -1.93
COL6A3P12111 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3□□□□□ -1.93
COL6A3P12111 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A3P12111 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A3P12111 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL6A3P12111 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A3P12111 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3□□□□□ -1.93
COL6A3P12111 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3□□□□□ -1.93
COL6A3P12111 AC007938.3-201ENST00000604965 623 ntBASIC3□□□□□ -1.93
COL6A3P12111 AC025034.2-201ENST00000623264 286 ntBASIC3□□□□□ -1.93
COL6A3P12111 RN7SKP199-201ENST00000410325 305 ntBASIC2.99□□□□□ -1.93
COL6A3P12111 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.99□□□□□ -1.93
COL6A3P12111 AL356320.1-201ENST00000429616 163 ntBASIC2.99□□□□□ -1.93
COL6A3P12111 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC2.99□□□□□ -1.93
COL6A3P12111 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.99□□□□□ -1.93
COL6A3P12111 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.99□□□□□ -1.93
COL6A3P12111 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms