Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC022483.1-201ENST00000514020 567 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC5.46□□□□□ -1.54
COL6A1P12109 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 AP004247.1-201ENST00000531556 1289 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 PSMB7P1-201ENST00000556349 514 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC006960.3-201ENST00000561845 705 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 MIR3939-201ENST00000582614 106 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 AC020914.6-201ENST00000594327 272 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 AC005332.6-201ENST00000613178 446 ntBASIC5.46□□□□□ -1.54
COL6A1P12109 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A1P12109 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
COL6A1P12109 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
COL6A1P12109 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
COL6A1P12109 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A1P12109 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A1P12109 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 Z73965.1-201ENST00000623412 2297 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A1P12109 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
COL6A1P12109 RN7SKP226-201ENST00000364912 300 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC007066.1-201ENST00000392902 381 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 MIR1277-201ENST00000408536 78 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 RNU2-65P-201ENST00000410162 185 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AL450992.3-201ENST00000413192 568 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AL109913.1-201ENST00000421173 514 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AL389915.1-201ENST00000422463 466 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 RPS27AP12-201ENST00000429552 465 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 BX276092.6-201ENST00000430476 250 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 RPL7P36-201ENST00000444633 681 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC004980.3-201ENST00000447046 365 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 BX276092.8-201ENST00000455722 250 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 ARPC3P2-201ENST00000457786 533 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC011276.1-201ENST00000469688 323 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC041039.1-201ENST00000485656 536 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC105252.1-201ENST00000503089 286 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC097486.1-201ENST00000515331 210 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.45□□□□□ -1.54
COL6A1P12109 RN7SKP82-201ENST00000516786 223 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC239860.2-201ENST00000525886 270 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC068993.1-201ENST00000546724 589 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC5.45□□□□□ -1.54
COL6A1P12109 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A1P12109 AP003117.2-201ENST00000606010 545 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 AC243756.2-201ENST00000618406 463 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC099654.10-201ENST00000640395 161 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
COL6A1P12109 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 AC046144.1-201ENST00000478559 1853 ntBASIC5.45□□□□□ -1.54
COL6A1P12109 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A1P12109 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A1P12109 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A1P12109 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A1P12109 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
COL6A1P12109 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A1P12109 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms