Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHROOM4Q9ULL8 AL592437.2-201ENST00000421655 2434 ntBASIC7.08□□□□□ -1.28
SHROOM4Q9ULL8 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
SHROOM4Q9ULL8 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 RNA5SP50-201ENST00000363731 107 ntBASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 RNU6-549P-201ENST00000384433 107 ntBASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 AC084198.1-201ENST00000477747 402 ntBASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 AC103843.2-201ENST00000530523 682 ntBASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 AC017076.1-201ENST00000607613 578 ntBASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 VN1R74P-201ENST00000613259 503 ntBASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 CROT-204ENST00000442291 1993 ntTSL 5 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
SHROOM4Q9ULL8 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AL603766.1-201ENST00000407763 664 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 RN7SKP247-201ENST00000411094 308 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 ARF4P4-201ENST00000439608 520 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 MTND1P33-201ENST00000446251 917 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 SEPT14P24-201ENST00000447236 180 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 RPS27AP1-201ENST00000475545 471 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AC093801.2-201ENST00000503966 1050 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AC069306.1-201ENST00000507006 843 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AC008885.2-201ENST00000509506 930 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AC069304.3-201ENST00000603938 1084 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 AL512427.1-201ENST00000618593 349 ntBASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHROOM4Q9ULL8 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 SNORD9-201ENST00000362566 104 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 RNA5SP146-201ENST00000410743 123 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 RNU6-272P-201ENST00000411028 104 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 DBIP2-201ENST00000419076 262 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 ZNF736P7Y-201ENST00000425158 820 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 ARL6IP1P2-201ENST00000431356 563 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 TRBV26OR9-2-201ENST00000432077 293 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 HMGB1P45-201ENST00000435986 653 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 MEG8-215ENST00000555354 469 ntTSL 3 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 AC010680.3-201ENST00000604215 520 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 AC025263.3-201ENST00000622965 1396 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 AL109659.3-201ENST00000624985 950 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 BMS1P21-201ENST00000634565 365 ntBASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHROOM4Q9ULL8 RNA5SP52-201ENST00000362448 134 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC011742.1-201ENST00000431448 434 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 HMGB1P48-201ENST00000446155 598 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC069240.1-201ENST00000548774 375 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 SERPINE4P-201ENST00000554978 281 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC011492.1-201ENST00000600023 315 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC009948.4-201ENST00000604692 675 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC131238.1-201ENST00000617135 328 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 MTND4P9-201ENST00000507819 1346 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 IPMKP1-201ENST00000425988 855 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC090877.1-201ENST00000561418 344 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC091488.1-201ENST00000604239 660 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AF129408.1-201ENST00000608767 431 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 AC013437.2-201ENST00000639587 677 ntBASIC7.04□□□□□ -1.28
SHROOM4Q9ULL8 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms