Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC023825.1-201ENST00000566704 1030 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 MTCO1P40-201ENST00000574371 625 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC090666.1-201ENST00000578241 445 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AP001180.3-201ENST00000582221 145 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL136370.1-201ENST00000608166 691 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 RMST_8.1-201ENST00000610287 165 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL450489.1-201ENST00000612071 468 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC005156.1-201ENST00000613371 573 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL731566.2-201ENST00000618971 317 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL109659.3-201ENST00000624985 950 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 CR381670.1-201ENST00000624291 1693 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC016716.1-201ENST00000265882 708 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 RNA5SP479-201ENST00000364858 117 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 MIR184-201ENST00000384962 84 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AL355143.1-201ENST00000407101 841 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AIMP1P1-201ENST00000418670 937 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 NPM1P34-201ENST00000428821 893 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC002542.1-201ENST00000440683 193 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 TXNP1-201ENST00000441872 371 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AL050341.1-201ENST00000447743 313 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 MTND2P39-201ENST00000457230 764 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC010468.1-201ENST00000461022 817 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 RPS27P23-201ENST00000487608 251 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 RN7SL323P-201ENST00000494712 295 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC093801.2-201ENST00000503966 1050 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC090071.1-201ENST00000507713 644 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 RNU6-416P-201ENST00000516265 103 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 RNU6-352P-201ENST00000516908 107 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 RN7SKP96-201ENST00000516948 297 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC093331.1-201ENST00000521474 169 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC022695.1-201ENST00000522089 237 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AF279873.1-201ENST00000523393 313 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC124293.1-201ENST00000530034 493 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 CYB5AP5-201ENST00000549779 389 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 SERPINE4P-201ENST00000554978 281 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 NIFKP8-201ENST00000560500 874 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC090877.1-201ENST00000561418 344 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 CYP2C60P-201ENST00000566088 139 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC099489.2-201ENST00000574976 260 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC008507.2-201ENST00000588402 1176 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC009948.4-201ENST00000604692 675 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC013468.1-201ENST00000608680 598 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC018645.2-201ENST00000609151 472 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC022079.2-201ENST00000619739 566 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AL121594.5-201ENST00000631724 573 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC139713.2-210ENST00000641741 992 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 SEPT7P7-201ENST00000420492 1301 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 ZNF542P-204ENST00000482727 1305 ntBASIC3.37□□□□□ -1.87
SKA3Q8IX90 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SKA3Q8IX90 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.37□□□□□ -1.87
SKA3Q8IX90 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms