Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 HLA-N-201ENST00000437516 135 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC092393.1-201ENST00000439625 742 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC006011.1-201ENST00000442758 349 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 APOOP2-201ENST00000461561 539 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC091153.1-201ENST00000466297 402 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 VPS26AP1-201ENST00000483197 979 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 RPS26P15-201ENST00000488067 348 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC146944.2-203ENST00000502493 354 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC139495.1-202ENST00000513164 354 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 SNORA67.7-201ENST00000516664 135 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 RNA5SP135-201ENST00000517019 125 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 OR4A2P-201ENST00000527276 913 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC023538.1-201ENST00000534576 736 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC084757.1-201ENST00000559987 490 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 MIR4429-201ENST00000580105 73 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 MIR3158-1-201ENST00000583596 81 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC017100.2-201ENST00000584628 355 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 CLIC4P2-201ENST00000601934 717 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC006133.1-201ENST00000617106 264 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 MIR6500-201ENST00000622700 86 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 AC097655.1-201ENST00000635075 318 ntBASIC4.4□□□□□ -1.71
USP41Q3LFD5 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
USP41Q3LFD5 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP41Q3LFD5 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 NOL8P1-201ENST00000508336 3529 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 SNORA60-201ENST00000362396 134 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 SNORA62.3-201ENST00000365110 153 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 MIR217-201ENST00000384817 110 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 RNU4-6P-201ENST00000410804 122 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 ELOCP9-201ENST00000418624 239 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 USP9YP22-201ENST00000438971 294 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 RPL23AP76-201ENST00000441860 458 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 MTND1P31-201ENST00000449206 961 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 NECAP1P2-201ENST00000455668 727 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 VWA8P1-201ENST00000510889 176 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 SNORD116-26-201ENST00000516006 96 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 VN1R78P-201ENST00000597393 564 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC069545.1-201ENST00000605671 358 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 AC022509.4-201ENST00000621404 572 ntBASIC4.39□□□□□ -1.71
USP41Q3LFD5 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP41Q3LFD5 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.39□□□□□ -1.71
USP41Q3LFD5 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
USP41Q3LFD5 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP41Q3LFD5 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP41Q3LFD5 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP41Q3LFD5 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
USP41Q3LFD5 RNU6-582P-201ENST00000362989 107 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 Y_RNA.465-201ENST00000384293 102 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 ATP5F1P3-201ENST00000397213 657 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 AL133264.1-201ENST00000407157 562 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 AL008987.1-201ENST00000415528 237 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.38□□□□□ -1.71
USP41Q3LFD5 AL389915.1-201ENST00000422463 466 ntBASIC4.38□□□□□ -1.71
USP41Q3LFD5 OR5BE1P-201ENST00000425977 939 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms