Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC2.13□□□□□ -2.07
PRKDCP78527 RPS3AP50-201ENST00000487064 803 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 RN7SKP283-201ENST00000517197 270 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 AC018555.1-201ENST00000567548 1980 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 RPL7P26-201ENST00000333817 754 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 HDGFP1-201ENST00000405943 252 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 OR2X1P-201ENST00000421144 687 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 HSPE1P16-201ENST00000426640 348 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 TRIM60P18-201ENST00000441518 828 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 OR9N1P-201ENST00000491296 333 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 AC114967.1-201ENST00000504890 259 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 RNA5SP148-201ENST00000516527 94 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 AP001646.1-201ENST00000527936 915 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 AC008079.2-201ENST00000623543 20396 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 RPL23AP36-201ENST00000413895 458 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC2.13□□□□□ -2.07
PRKDCP78527 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.13□□□□□ -2.07
PRKDCP78527 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.13□□□□□ -2.07
PRKDCP78527 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 AC005005.4-201ENST00000623789 16698 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 RNU4-26P-201ENST00000410270 107 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 RPL12P18-201ENST00000437175 325 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 HMGB3P12-201ENST00000438745 556 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 AC007954.1-201ENST00000554198 494 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 OR4K7P-201ENST00000580232 945 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.12□□□□□ -2.07
PRKDCP78527 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
PRKDCP78527 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PRKDCP78527 NSRP1P1-201ENST00000444067 1693 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PRKDCP78527 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC2.12□□□□□ -2.07
PRKDCP78527 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
PRKDCP78527 RNVU1-3-201ENST00000364313 161 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 RPL7P8-201ENST00000411964 730 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.12□□□□□ -2.07
PRKDCP78527 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 RGS4-207ENST00000527809 817 ntTSL 4 BASIC2.12□□□□□ -2.07
PRKDCP78527 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.12□□□□□ -2.07
PRKDCP78527 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.12□□□□□ -2.07
PRKDCP78527 YWHAZP1-201ENST00000556286 722 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.12□□□□□ -2.07
PRKDCP78527 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
PRKDCP78527 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 RPS4XP5-202ENST00000449995 1334 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 RPL21P132-201ENST00000331267 462 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 SNORA17.3-201ENST00000391159 129 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC2.12□□□□□ -2.07
PRKDCP78527 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC2.12□□□□□ -2.07
PRKDCP78527 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.12□□□□□ -2.07
PRKDCP78527 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
PRKDCP78527 OR4G2P-202ENST00000641004 1759 ntBASIC2.12□□□□□ -2.07
PRKDCP78527 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC2.12□□□□□ -2.07
PRKDCP78527 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 RNU6-76P-201ENST00000384060 104 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 MTND2P25-201ENST00000449028 610 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AC090525.1-201ENST00000479116 478 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.11□□□□□ -2.07
PRKDCP78527 AC111000.2-201ENST00000507775 550 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.11□□□□□ -2.07
PRKDCP78527 AL031595.2-201ENST00000624215 19071 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.11□□□□□ -2.07
PRKDCP78527 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 AL356057.3-201ENST00000402607 340 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AL121834.1-202ENST00000404494 277 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AP001636.2-201ENST00000525517 696 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC2.11□□□□□ -2.07
PRKDCP78527 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.11□□□□□ -2.07
PRKDCP78527 AC015871.2-201ENST00000603605 948 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AC009570.1-201ENST00000609599 745 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 MIR8070-201ENST00000616510 88 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC2.11□□□□□ -2.07
PRKDCP78527 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
PRKDCP78527 SNORD114-30-201ENST00000364448 72 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 AC087499.2-201ENST00000432861 149 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
PRKDCP78527 SNORA70.19-201ENST00000516717 90 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 MYL12AP1-201ENST00000518490 515 ntBASIC2.11□□□□□ -2.07
PRKDCP78527 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC2.11□□□□□ -2.07
PRKDCP78527 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms