Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.03□□□□□ -1.6
COL3A1P02461 SETP9-201ENST00000423837 832 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 VN1R42P-201ENST00000424651 344 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 GTF2IP3-201ENST00000433887 494 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC5.03□□□□□ -1.6
COL3A1P02461 RNU7-125P-201ENST00000458760 62 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.03□□□□□ -1.6
COL3A1P02461 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC026726.1-201ENST00000512859 601 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 RNU4ATAC6P-201ENST00000516592 126 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 SCARNA13-201ENST00000516672 275 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 RNU6-1028P-201ENST00000517164 93 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 MTND4LP26-201ENST00000518144 282 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC073648.5-201ENST00000603502 305 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC010738.1-201ENST00000604970 987 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AL135786.2-201ENST00000608422 615 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC026368.1-201ENST00000614934 690 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.03□□□□□ -1.6
COL3A1P02461 AC073968.1-201ENST00000618594 637 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC022079.2-201ENST00000619739 566 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC092656.1-203ENST00000624134 423 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC091965.5-201ENST00000624785 342 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 AC006042.3-201ENST00000454684 1469 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
COL3A1P02461 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL3A1P02461 USP8P1-201ENST00000494673 3183 ntBASIC5.03□□□□□ -1.6
COL3A1P02461 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 AC017002.4-201ENST00000604721 1525 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 AL021407.1-201ENST00000404531 386 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 RNA5SP39-201ENST00000411245 120 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 ATP5A1P2-201ENST00000412323 255 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.02□□□□□ -1.61
COL3A1P02461 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.02□□□□□ -1.61
COL3A1P02461 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 ARL5AP3-201ENST00000439327 386 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 PTENP1-201ENST00000447117 1215 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 ELOCP23-201ENST00000452014 332 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 OR52Y1P-201ENST00000452418 828 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 SYPL1P1-201ENST00000473622 768 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AC025445.1-201ENST00000502728 300 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 RNU6-720P-201ENST00000516363 108 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 SEC11B-201ENST00000518383 499 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.02□□□□□ -1.61
COL3A1P02461 OR5G4P-201ENST00000525251 760 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 OR4A12P-201ENST00000530847 918 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.02□□□□□ -1.61
COL3A1P02461 ACTR3BP3-201ENST00000565577 979 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AC022069.1-201ENST00000582910 658 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AL031985.2-201ENST00000600955 480 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AL163642.2-201ENST00000604722 1019 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 AF250324.2-201ENST00000608299 610 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC099842.1-201ENST00000619919 596 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 AL356266.1-201ENST00000623311 483 ntBASIC5.02□□□□□ -1.61
COL3A1P02461 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL3A1P02461 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL3A1P02461 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL3A1P02461 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.02□□□□□ -1.61
COL3A1P02461 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC5.02□□□□□ -1.61
COL3A1P02461 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL3A1P02461 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.02□□□□□ -1.61
COL3A1P02461 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.02□□□□□ -1.61
COL3A1P02461 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL3A1P02461 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.01□□□□□ -1.61
COL3A1P02461 RPF2P1-201ENST00000424137 906 ntBASIC5.01□□□□□ -1.61
COL3A1P02461 MTND4P28-201ENST00000426217 387 ntBASIC5.01□□□□□ -1.61
COL3A1P02461 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.01□□□□□ -1.61
COL3A1P02461 AC091286.1-201ENST00000431233 461 ntBASIC5.01□□□□□ -1.61
COL3A1P02461 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL3A1P02461 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC5.01□□□□□ -1.61
COL3A1P02461 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.01□□□□□ -1.61
COL3A1P02461 TAF9P1-201ENST00000445421 515 ntBASIC5.01□□□□□ -1.61
COL3A1P02461 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.01□□□□□ -1.61
COL3A1P02461 TAF9P2-201ENST00000454958 515 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms