Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC100832.1-201ENST00000471945 383 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RN7SL466P-201ENST00000497546 295 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 DYNLL1P6-201ENST00000503440 264 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AF131216.2-201ENST00000512316 564 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 SNORA19.2-201ENST00000516013 114 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 ZNF705CP-201ENST00000530515 889 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AP003122.4-201ENST00000530980 758 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC243972.3-201ENST00000539655 198 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC018638.8-201ENST00000588755 281 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL133215.3-201ENST00000609801 448 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC090527.3-201ENST00000619041 548 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 MIR8080-201ENST00000622224 89 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 RPL23AP61-201ENST00000623642 466 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AC126323.6-202ENST00000568092 3511 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 AL121950.1-201ENST00000624993 2077 ntBASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
CCDC39Q9UFE4 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.02□□□□□ -1.44
CCDC39Q9UFE4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.44
CCDC39Q9UFE4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 SEC63P2-201ENST00000503863 1939 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 RNA5SP234-201ENST00000363916 119 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 RN7SKP15-201ENST00000364742 309 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 SNORA17A-201ENST00000391185 133 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AL133388.1-201ENST00000404509 287 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 RNU2-42P-201ENST00000410697 113 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 BX295541.1-201ENST00000417774 250 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC012075.1-201ENST00000436549 580 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 RPS11P7-201ENST00000442125 465 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AL035090.1-201ENST00000454835 332 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 RANP1-206ENST00000455094 651 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC021205.1-201ENST00000468797 348 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC093278.1-201ENST00000494700 600 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 SNX5P1-201ENST00000505757 1041 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 ELOCP31-201ENST00000540463 467 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AL390334.1-201ENST00000556395 450 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC093249.1-201ENST00000567049 203 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 BNIP3P23-201ENST00000599655 511 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC011453.2-201ENST00000603737 729 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 RNU6-88P-201ENST00000606801 100 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC004908.2-201ENST00000609090 574 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC243756.2-201ENST00000618406 463 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 SNORA17.5-201ENST00000630429 132 ntBASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC39Q9UFE4 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AP002907.1-201ENST00000606361 1430 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 MIR133B-201ENST00000362210 119 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 Y_RNA.128-201ENST00000363391 112 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 Y_RNA.133-201ENST00000363428 110 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 SNORA4.3-201ENST00000365564 137 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RNU6-1103P-201ENST00000384150 107 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 MIR559-201ENST00000385188 96 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms