Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RHEBP3-201ENST00000411920 351 ntBASIC3.53□□□□□ -1.84
SDC1P18827 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AC002075.2-201ENST00000425207 252 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 SETD6P1-201ENST00000444575 317 ntBASIC3.53□□□□□ -1.84
SDC1P18827 HSFY6P-201ENST00000445573 403 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 AC099563.1-201ENST00000456086 418 ntBASIC3.53□□□□□ -1.84
SDC1P18827 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 RPL21P71-201ENST00000465598 459 ntBASIC3.53□□□□□ -1.84
SDC1P18827 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 AC068305.1-201ENST00000497406 726 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AC091860.1-201ENST00000505723 432 ntBASIC3.53□□□□□ -1.84
SDC1P18827 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 MTCO1P35-201ENST00000515270 228 ntBASIC3.53□□□□□ -1.84
SDC1P18827 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.53□□□□□ -1.84
SDC1P18827 HIGD1AP6-201ENST00000521833 279 ntBASIC3.53□□□□□ -1.84
SDC1P18827 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 OR5AP1P-201ENST00000529730 940 ntBASIC3.53□□□□□ -1.84
SDC1P18827 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.53□□□□□ -1.84
SDC1P18827 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 AC087499.8-201ENST00000578406 226 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.53□□□□□ -1.84
SDC1P18827 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 AC020910.2-201ENST00000603635 610 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AP002802.2-201ENST00000605877 235 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AP004247.3-201ENST00000608682 624 ntBASIC3.53□□□□□ -1.84
SDC1P18827 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 MIR378J-201ENST00000611988 109 ntBASIC3.53□□□□□ -1.84
SDC1P18827 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.53□□□□□ -1.84
SDC1P18827 AC009452.1-201ENST00000640823 606 ntBASIC3.53□□□□□ -1.84
SDC1P18827 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SDC1P18827 HSPA8P1-201ENST00000425843 1833 ntBASIC3.53□□□□□ -1.84
SDC1P18827 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 AC024560.2-201ENST00000507981 1497 ntBASIC3.53□□□□□ -1.84
SDC1P18827 MFSD8-220ENST00000641243 1422 ntBASIC3.53□□□□□ -1.85
SDC1P18827 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 RNU6-549P-201ENST00000384433 107 ntBASIC3.52□□□□□ -1.85
SDC1P18827 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SDC1P18827 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 SNORA3.3-201ENST00000408712 125 ntBASIC3.52□□□□□ -1.85
SDC1P18827 NUP35P2-201ENST00000416748 943 ntBASIC3.52□□□□□ -1.85
SDC1P18827 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.52□□□□□ -1.85
SDC1P18827 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 RPS29P31-201ENST00000446147 164 ntBASIC3.52□□□□□ -1.85
SDC1P18827 RPS15AP1-201ENST00000457423 391 ntBASIC3.52□□□□□ -1.85
SDC1P18827 snoU13.7-201ENST00000459220 104 ntBASIC3.52□□□□□ -1.85
SDC1P18827 RPS20P21-201ENST00000466859 343 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AC022034.3-201ENST00000471393 478 ntBASIC3.52□□□□□ -1.85
SDC1P18827 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AC010460.1-201ENST00000507087 466 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AC005351.1-201ENST00000511152 786 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AC119751.1-201ENST00000513357 765 ntBASIC3.52□□□□□ -1.85
SDC1P18827 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC1P18827 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC1P18827 MTND2P26-201ENST00000528255 1029 ntBASIC3.52□□□□□ -1.85
SDC1P18827 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC1P18827 CYCSP30-201ENST00000546447 172 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC1P18827 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC1P18827 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC1P18827 TRAV15-201ENST00000556680 249 ntBASIC3.52□□□□□ -1.85
SDC1P18827 ZNF971P-201ENST00000562068 1249 ntBASIC3.52□□□□□ -1.85
SDC1P18827 EIF5A2P1-201ENST00000564027 460 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC1P18827 AC017100.2-201ENST00000584628 355 ntBASIC3.52□□□□□ -1.85
SDC1P18827 VN1R79P-201ENST00000593540 513 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.52□□□□□ -1.85
SDC1P18827 BNIP3P27-201ENST00000599991 412 ntBASIC3.52□□□□□ -1.85
SDC1P18827 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.52□□□□□ -1.85
SDC1P18827 AC002487.1-201ENST00000604565 994 ntBASIC3.52□□□□□ -1.85
SDC1P18827 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.52□□□□□ -1.85
SDC1P18827 RNA5SP196-201ENST00000625967 102 ntBASIC3.52□□□□□ -1.85
SDC1P18827 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 AC107081.3-201ENST00000612715 2034 ntBASIC3.52□□□□□ -1.85
SDC1P18827 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.52□□□□□ -1.85
SDC1P18827 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SDC1P18827 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SDC1P18827 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms