Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.15□□□□□ -1.59
HLA-DOAP06340 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.15□□□□□ -1.59
HLA-DOAP06340 AC107021.2-201ENST00000567714 2095 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 RNA5SP515-201ENST00000364570 118 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 SNORA75-201ENST00000384158 137 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 RNU6-253P-201ENST00000384730 105 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL161909.1-201ENST00000397390 712 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC097374.1-203ENST00000400783 485 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL133264.1-201ENST00000407157 562 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 CTSL3P-202ENST00000412179 788 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 MRPS36P1-201ENST00000421291 307 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 CYCSP46-201ENST00000423569 204 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 MTND1P30-201ENST00000441241 901 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC072039.1-201ENST00000477611 581 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL592156.1-201ENST00000508758 304 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AP001317.1-201ENST00000531194 960 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC087883.1-201ENST00000551882 391 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL592221.1-201ENST00000605266 382 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL591034.3-201ENST00000605511 685 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC069545.1-201ENST00000605671 358 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 Z98200.1-201ENST00000607298 470 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC109347.2-201ENST00000610220 349 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
HLA-DOAP06340 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
HLA-DOAP06340 RNF6P1-201ENST00000444889 1784 ntBASIC5.14□□□□□ -1.59
HLA-DOAP06340 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DOAP06340 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DOAP06340 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DOAP06340 Y_RNA.6-201ENST00000362350 114 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 Y_RNA.126-201ENST00000363382 111 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 MIR137-201ENST00000385223 102 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC004448.2-201ENST00000422360 586 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 EIF1P3-201ENST00000423841 334 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL009174.1-201ENST00000426577 416 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 MRPS10P2-201ENST00000431226 381 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 BTF3P10-201ENST00000433415 495 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 SEPT7P5-201ENST00000434048 306 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 CEACAMP1-201ENST00000434624 1035 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 USP9YP35-201ENST00000435696 412 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 Z74696.2-201ENST00000436514 498 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 COX6CP2-201ENST00000444980 225 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 RPL36AP33-201ENST00000450395 310 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 SNRPGP9-201ENST00000456025 225 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC108751.2-201ENST00000469993 231 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL035404.1-201ENST00000497982 568 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC096751.1-202ENST00000502691 1067 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 SMARCE1P4-201ENST00000523647 241 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 VN1R85P-201ENST00000601587 426 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL354984.3-201ENST00000604803 325 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL160290.3-201ENST00000604869 165 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AC138749.5-201ENST00000611461 208 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 FAM27D1-201ENST00000612308 341 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL356266.1-201ENST00000623311 483 ntBASIC5.13□□□□□ -1.59
HLA-DOAP06340 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HLA-DOAP06340 AL603839.4-201ENST00000624658 1005 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms