Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC10.35□□□□□ -0.75
MSH5O43196 AC010928.2-201ENST00000588017 287 ntBASIC10.35□□□□□ -0.75
MSH5O43196 AC099669.2-201ENST00000616549 437 ntBASIC10.35□□□□□ -0.75
MSH5O43196 AL353898.2-201ENST00000623000 255 ntBASIC10.35□□□□□ -0.75
MSH5O43196 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
MSH5O43196 ALDOB-201ENST00000374855 2451 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 AC005225.5-201ENST00000623547 2225 ntBASIC10.35□□□□□ -0.75
MSH5O43196 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 MAPK10-319ENST00000641459 2542 ntBASIC10.35□□□□□ -0.75
MSH5O43196 AC025569.1-202ENST00000548687 5903 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
MSH5O43196 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC10.35□□□□□ -0.75
MSH5O43196 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 AC011592.1-201ENST00000624647 3634 ntBASIC10.34□□□□□ -0.75
MSH5O43196 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC10.34□□□□□ -0.75
MSH5O43196 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
MSH5O43196 RNU4-9P-201ENST00000364951 139 ntBASIC10.34□□□□□ -0.75
MSH5O43196 Y_RNA.319-201ENST00000365138 92 ntBASIC10.34□□□□□ -0.75
MSH5O43196 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC10.34□□□□□ -0.75
MSH5O43196 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
MSH5O43196 PKMP3-201ENST00000405497 715 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AL133260.1-201ENST00000405720 405 ntBASIC10.34□□□□□ -0.75
MSH5O43196 ZNF37CP-201ENST00000406795 241 ntBASIC10.34□□□□□ -0.75
MSH5O43196 RNU2-54P-201ENST00000410299 190 ntBASIC10.34□□□□□ -0.75
MSH5O43196 CEACAMP1-201ENST00000434624 1035 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AC110602.1-201ENST00000437414 318 ntBASIC10.34□□□□□ -0.75
MSH5O43196 EEF1A1P1-201ENST00000447052 739 ntBASIC10.34□□□□□ -0.75
MSH5O43196 RN7SL414P-201ENST00000469545 294 ntBASIC10.34□□□□□ -0.75
MSH5O43196 RPL7AP30-201ENST00000482859 796 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AC004453.1-201ENST00000487895 408 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AC116353.1-201ENST00000489727 316 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AL049869.4-201ENST00000555669 178 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AC007012.1-201ENST00000567192 175 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AL590392.1-201ENST00000604960 446 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AC113554.1-201ENST00000606284 490 ntBASIC10.34□□□□□ -0.75
MSH5O43196 RN7SL82P-201ENST00000611435 237 ntBASIC10.34□□□□□ -0.75
MSH5O43196 RN7SL628P-201ENST00000619139 237 ntBASIC10.34□□□□□ -0.75
MSH5O43196 AL034408.1-202ENST00000636088 415 ntBASIC10.34□□□□□ -0.75
MSH5O43196 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC10.34□□□□□ -0.75
MSH5O43196 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
MSH5O43196 AL022163.1-201ENST00000430261 1569 ntBASIC10.34□□□□□ -0.75
MSH5O43196 EYA4-213ENST00000531901 2892 ntAPPRIS ALT2 TSL 2 BASIC10.34□□□□□ -0.75
MSH5O43196 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC10.34□□□□□ -0.75
MSH5O43196 AL137058.3-201ENST00000624531 3099 ntBASIC10.34□□□□□ -0.75
MSH5O43196 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 PRKAR2A-AS1-202ENST00000416209 3447 ntTSL 2 BASIC10.33□□□□□ -0.76
MSH5O43196 STAT2-202ENST00000418572 1548 ntTSL 2 BASIC10.33□□□□□ -0.76
MSH5O43196 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 RPL12P13-201ENST00000310055 497 ntBASIC10.33□□□□□ -0.76
MSH5O43196 Y_RNA.24-201ENST00000362508 103 ntBASIC10.33□□□□□ -0.76
MSH5O43196 Y_RNA.73-201ENST00000362910 113 ntBASIC10.33□□□□□ -0.76
MSH5O43196 IGLV3-12-201ENST00000390313 356 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
MSH5O43196 RNU1-139P-201ENST00000391307 165 ntBASIC10.33□□□□□ -0.76
MSH5O43196 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC10.33□□□□□ -0.76
MSH5O43196 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC10.33□□□□□ -0.76
MSH5O43196 TREML3P-201ENST00000457327 501 ntBASIC10.33□□□□□ -0.76
MSH5O43196 RN7SL259P-201ENST00000478499 253 ntBASIC10.33□□□□□ -0.76
MSH5O43196 RPL32P33-201ENST00000487023 394 ntBASIC10.33□□□□□ -0.76
MSH5O43196 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC10.33□□□□□ -0.76
MSH5O43196 ATP5J2P4-201ENST00000538774 267 ntBASIC10.33□□□□□ -0.76
MSH5O43196 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC10.33□□□□□ -0.76
MSH5O43196 RN7SL14P-201ENST00000579715 298 ntBASIC10.33□□□□□ -0.76
MSH5O43196 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC10.33□□□□□ -0.76
MSH5O43196 AC060766.3-201ENST00000591442 263 ntBASIC10.33□□□□□ -0.76
MSH5O43196 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 AC083809.1-201ENST00000615051 472 ntBASIC10.33□□□□□ -0.76
MSH5O43196 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC10.33□□□□□ -0.76
MSH5O43196 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 AC241584.2-201ENST00000637142 2090 ntBASIC10.33□□□□□ -0.76
MSH5O43196 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC10.33□□□□□ -0.76
MSH5O43196 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
MSH5O43196 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 EHF-201ENST00000257831 3150 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC10.32□□□□□ -0.76
MSH5O43196 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC10.32□□□□□ -0.76
MSH5O43196 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC10.32□□□□□ -0.76
MSH5O43196 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 MPEG1-201ENST00000361050 4442 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
MSH5O43196 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
MSH5O43196 AP001157.1-201ENST00000550837 2339 ntBASIC10.32□□□□□ -0.76
MSH5O43196 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms