Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC016542.1-201ENST00000608259 493 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 OR6R2P-201ENST00000609216 300 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AL121594.5-201ENST00000631724 573 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
LHX3Q9UBR4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AL161912.2-201ENST00000565707 3007 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RNU5B-1-201ENST00000363286 116 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RNU6-549P-201ENST00000384433 107 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 MIR124-3-201ENST00000384866 87 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RAB9AP3-201ENST00000412737 573 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 HIGD1AP12-201ENST00000427832 281 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC018644.1-201ENST00000429934 551 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 UBE2V1P1-201ENST00000430836 445 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RPS7P2-201ENST00000435134 607 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RAB11AP1-201ENST00000442978 646 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AL592437.1-201ENST00000443781 492 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AL133547.1-201ENST00000448546 220 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RAB9AP1-201ENST00000449393 573 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC006480.1-201ENST00000449887 378 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AL451050.1-201ENST00000450126 415 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC022034.3-201ENST00000471393 478 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC010342.1-201ENST00000514047 877 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RNU6-202P-201ENST00000515998 96 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 RN7SKP277-201ENST00000516895 283 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC008011.1-201ENST00000545989 227 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 NIFKP8-201ENST00000560500 874 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC104072.1-201ENST00000568817 668 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC022079.2-201ENST00000619739 566 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC091905.1-201ENST00000624400 311 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC012442.3-202ENST00000636742 206 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 AC011978.2-201ENST00000569835 2054 ntBASIC3.77□□□□□ -1.81
LHX3Q9UBR4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LHX3Q9UBR4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 RNU6-353P-201ENST00000364266 108 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 U3.15-201ENST00000365398 212 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AC234772.1-201ENST00000377927 937 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 SNORA70E-201ENST00000384492 135 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 BTBD10P2-201ENST00000404779 676 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 TAF13P2-201ENST00000416876 286 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 FGF7P3-201ENST00000454645 303 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 NAP1L1P3-201ENST00000462291 880 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 PRDX3P4-201ENST00000470828 747 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 BTF3L4P4-201ENST00000506381 449 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 TRMT10BP1-201ENST00000519377 943 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AP003066.2-201ENST00000529375 555 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.76□□□□□ -1.81
LHX3Q9UBR4 EIF5A2P1-201ENST00000564027 460 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 MTCO1P40-201ENST00000574371 625 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 LLPHP1-201ENST00000603571 367 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AC007390.2-201ENST00000606229 3803 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AL391497.1-201ENST00000608671 547 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 AP004247.3-201ENST00000608682 624 ntBASIC3.76□□□□□ -1.81
LHX3Q9UBR4 CR392039.5-201ENST00000623201 510 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms