Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 RNU1-6P-201ENST00000516290 144 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC133555.2-201ENST00000550213 292 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC022146.1-201ENST00000595307 847 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 BNIP3P33-201ENST00000598912 569 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 MTCYBP22-201ENST00000603788 447 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC010680.3-201ENST00000604215 520 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC091946.2-201ENST00000606105 291 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC092794.1-201ENST00000612734 582 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC025594.3-201ENST00000613068 790 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC005332.6-201ENST00000613178 446 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 MIR6780A-201ENST00000615089 68 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC234782.5-201ENST00000617723 324 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC099842.1-201ENST00000619919 596 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AC006927.3-201ENST00000638789 384 ntBASIC4.84□□□□□ -1.63
DKK3Q9UBP4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.84□□□□□ -1.63
DKK3Q9UBP4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.64
DKK3Q9UBP4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC005832.2-201ENST00000538921 1430 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 Y_RNA.3-201ENST00000362331 103 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RNA5SP502-201ENST00000362694 119 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RNU4-91P-201ENST00000364778 135 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 SUGT1P1-201ENST00000379514 476 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RNU6-1119P-201ENST00000384349 108 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RNU6-517P-201ENST00000384362 110 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 Y_RNA.517-201ENST00000384551 106 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 DEFB108C-201ENST00000400154 252 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL078604.1-201ENST00000404609 466 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RSU1P3-201ENST00000412878 835 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 SKP1P3-201ENST00000429280 487 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 OR2B7P-201ENST00000429302 934 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL359265.2-201ENST00000434367 631 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 CDC27P1-201ENST00000445384 715 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RPL7P31-201ENST00000450192 724 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 SUMO2P2-201ENST00000456482 255 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC093899.1-201ENST00000457984 376 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC015724.1-201ENST00000478577 156 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC109927.2-201ENST00000506416 303 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC109458.1-201ENST00000508858 316 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 CDC42P4-201ENST00000510507 563 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC134698.4-201ENST00000523451 826 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 PARP1P2-201ENST00000556806 195 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC012414.6-201ENST00000568241 401 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC087683.1-201ENST00000591187 441 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 RBM11P1-201ENST00000604951 799 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC239868.4-201ENST00000608318 671 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 SNORD91B-202ENST00000608459 222 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC106028.5-201ENST00000610332 395 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AL161616.1-201ENST00000611867 286 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 AC026368.1-201ENST00000614934 690 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 uc_338.9-201ENST00000617424 182 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 MKKS-204ENST00000639674 192 ntBASIC4.83□□□□□ -1.64
DKK3Q9UBP4 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
DKK3Q9UBP4 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms