Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 OR2AS2P-201ENST00000606902 342 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 RN7SKP116-201ENST00000516902 319 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 AC009812.2-201ENST00000517657 457 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 AC107934.2-201ENST00000518653 310 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 MIR4738-201ENST00000579134 87 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 CYCSP41-201ENST00000616920 296 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 AC092435.3-201ENST00000565538 3654 ntBASIC3.89□□□□□ -1.79
CCDC88AQ3V6T2 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 DDX18P3-201ENST00000404856 2007 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 MIR423-201ENST00000362201 94 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC127526.1-201ENST00000417526 366 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 RPS12P5-201ENST00000423449 371 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 BX679664.1-201ENST00000434429 253 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 RPL31P50-201ENST00000471002 296 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 RNA5SP367-201ENST00000516557 118 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 HSPA8P1-201ENST00000425843 1833 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 SPATA2P1-201ENST00000431223 2055 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 RNA5SP31-201ENST00000411144 127 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC007899.1-201ENST00000412776 775 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC093156.1-201ENST00000440382 670 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 VWA8P1-201ENST00000510889 176 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 MIR4425-201ENST00000580572 84 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC007619.2-201ENST00000605743 379 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC245100.7-201ENST00000609678 442 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 TUG1_1.1-201ENST00000610654 145 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 AC012020.1-201ENST00000624541 1728 ntBASIC3.88□□□□□ -1.79
CCDC88AQ3V6T2 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RPS4XP8-201ENST00000402039 771 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RNU6-55P-201ENST00000411092 107 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RNU6-954P-201ENST00000411355 107 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 ISCA1P2-201ENST00000438679 421 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RPL7P36-201ENST00000444633 681 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 YWHAEP4-201ENST00000505390 198 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RNA5SP217-201ENST00000515959 91 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 AL139174.1-201ENST00000531489 886 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 AL137072.1-201ENST00000603444 466 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 AC116096.1-201ENST00000566804 2314 ntBASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC88AQ3V6T2 AL451142.2-201ENST00000429076 2090 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AL365361.1-201ENST00000566942 3481 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 NEAT1-202ENST00000501122 22743 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AL139413.1-201ENST00000421309 217 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AL139281.1-201ENST00000422120 335 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 COX6B1P6-201ENST00000522347 255 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 EIF5A2P1-201ENST00000564027 460 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 OR5BR1P-201ENST00000524992 1330 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms