Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AC073592.6-201ENST00000624271 415 ntBASIC5.72□□□□□ -1.49
PCDH1Q08174 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDH1Q08174 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
PCDH1Q08174 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PCDH1Q08174 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDH1Q08174 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDH1Q08174 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.72□□□□□ -1.49
PCDH1Q08174 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PCDH1Q08174 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PCDH1Q08174 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
PCDH1Q08174 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
PCDH1Q08174 AL121839.2-201ENST00000565058 6943 ntBASIC5.71□□□□□ -1.49
PCDH1Q08174 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDH1Q08174 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 OR5P1P-201ENST00000299512 925 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 SELENOWP1-201ENST00000322792 252 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 Y_RNA.234-201ENST00000364409 97 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
PCDH1Q08174 U3.20-201ENST00000390909 217 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC245054.2-201ENST00000415639 319 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC018630.2-202ENST00000422992 927 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AL663074.2-201ENST00000440621 479 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDH1Q08174 OR7E116P-201ENST00000448529 957 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC005077.1-201ENST00000449226 375 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 snoU13.8-201ENST00000458890 104 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 FAM206BP-201ENST00000510179 541 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC011853.1-201ENST00000518911 454 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.71□□□□□ -1.5
PCDH1Q08174 RPL7P20-201ENST00000520308 745 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC126615.2-201ENST00000553003 515 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 SETP2-201ENST00000553886 926 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 RPA2P1-201ENST00000556557 721 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 MIR4310-201ENST00000582950 57 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 DPPA3P3-201ENST00000603842 430 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 NANOGP3-201ENST00000605855 286 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC004908.2-201ENST00000609090 574 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.71□□□□□ -1.5
PCDH1Q08174 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 uc_338.15-201ENST00000615470 191 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AL136228.1-201ENST00000622221 319 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC073593.1-201ENST00000624500 411 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AL078596.1-201ENST00000624856 447 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDH1Q08174 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
PCDH1Q08174 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC011460.1-201ENST00000636268 1834 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDH1Q08174 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
PCDH1Q08174 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 AC011933.2-201ENST00000578539 2790 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 AC020656.2-201ENST00000613291 5309 ntBASIC5.71□□□□□ -1.5
PCDH1Q08174 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDH1Q08174 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH1Q08174 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDH1Q08174 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PCDH1Q08174 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH1Q08174 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH1Q08174 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH1Q08174 MTND5P1-201ENST00000445440 1375 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH1Q08174 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
PCDH1Q08174 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PCDH1Q08174 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH1Q08174 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
PCDH1Q08174 RNU6-97P-201ENST00000363387 104 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 RNU5E-8P-201ENST00000363502 116 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH1Q08174 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH1Q08174 RNU6-39P-201ENST00000384344 107 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 GCNT1P4-201ENST00000404096 329 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 AL359634.1-202ENST00000404721 284 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDH1Q08174 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH1Q08174 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH1Q08174 AC079807.1-201ENST00000429993 481 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 TIMM9P1-201ENST00000436122 256 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 IPO7P1-201ENST00000442031 636 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 CYCSP51-201ENST00000443545 318 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 AC009963.3-201ENST00000458090 486 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 Y_RNA.635-201ENST00000459041 101 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 AC087879.1-201ENST00000474343 374 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 AC021146.2-201ENST00000504736 556 ntBASIC5.7□□□□□ -1.5
PCDH1Q08174 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms