Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC5.17□□□□□ -1.58
SMARCA1P28370 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.17□□□□□ -1.58
SMARCA1P28370 RN7SL459P-201ENST00000481078 302 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 RPL7P38-201ENST00000488396 739 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC5.17□□□□□ -1.58
SMARCA1P28370 OR51K1P-201ENST00000510214 950 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 RNU6-202P-201ENST00000515998 96 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 SNORD116-26-201ENST00000516006 96 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 RNA5SP497-201ENST00000516081 97 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 RNY4P37-201ENST00000516225 96 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 SNORA48.10-201ENST00000516965 160 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AP003033.1-201ENST00000527244 415 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AL121766.1-201ENST00000547436 487 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 AC007954.1-201ENST00000554198 494 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 AC093519.1-201ENST00000566109 298 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.17□□□□□ -1.58
SMARCA1P28370 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AC064872.1-201ENST00000604823 1072 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.17□□□□□ -1.58
SMARCA1P28370 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SMARCA1P28370 AC105074.1-201ENST00000623380 3095 ntBASIC5.17□□□□□ -1.58
SMARCA1P28370 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SMARCA1P28370 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 OR5P1P-201ENST00000299512 925 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 RNU6-500P-201ENST00000362349 107 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 RNU6-623P-201ENST00000363143 105 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 RNA5SP447-201ENST00000363749 119 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC023347.2-201ENST00000433994 462 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AL590103.1-201ENST00000434488 307 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 VN1R32P-201ENST00000452234 905 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 DHFRP3-201ENST00000455595 559 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 RPL21P71-201ENST00000465598 459 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.16□□□□□ -1.58
SMARCA1P28370 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.16□□□□□ -1.58
SMARCA1P28370 RN7SKP96-201ENST00000516948 297 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC090151.1-201ENST00000520784 730 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.16□□□□□ -1.58
SMARCA1P28370 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.16□□□□□ -1.58
SMARCA1P28370 CYCSP28-201ENST00000534284 321 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 SERPINE4P-201ENST00000554978 281 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC006270.3-201ENST00000605967 1036 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AC090948.1-201ENST00000607464 549 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 AC245297.2-201ENST00000610119 565 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 MAPK10-320ENST00000641462 6696 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.16□□□□□ -1.58
SMARCA1P28370 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 AC139713.2-214ENST00000642059 1811 ntBASIC5.16□□□□□ -1.58
SMARCA1P28370 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMARCA1P28370 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.16□□□□□ -1.58
SMARCA1P28370 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
SMARCA1P28370 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.15□□□□□ -1.58
SMARCA1P28370 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SMARCA1P28370 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SMARCA1P28370 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SMARCA1P28370 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SMARCA1P28370 RNU6-115P-201ENST00000364310 107 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SMARCA1P28370 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SMARCA1P28370 RNU1-63P-201ENST00000383902 164 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 RNU6-253P-201ENST00000384730 105 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 MT-TH-201ENST00000387441 69 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 SNORA26.8-201ENST00000391306 124 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 SNORA11F-201ENST00000408237 128 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 PRELID3BP11-201ENST00000414230 479 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.15□□□□□ -1.59
SMARCA1P28370 AL139095.3-201ENST00000419672 1203 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 IPMKP1-201ENST00000425988 855 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 AL732292.1-201ENST00000426692 226 ntBASIC5.15□□□□□ -1.59
SMARCA1P28370 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5.15□□□□□ -1.59
SMARCA1P28370 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms