Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 RNU6-433P-201ENST00000363216 104 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 Y_RNA.166-201ENST00000363730 102 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 SNORA16A-201ENST00000384342 137 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC005522.1-201ENST00000395416 346 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 MIR548P-201ENST00000408336 84 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 JKAMPP1-201ENST00000413804 919 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 VDAC1P6-201ENST00000430062 855 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 SEPT7P5-201ENST00000434048 306 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL390119.1-201ENST00000440329 312 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL831737.1-201ENST00000441288 271 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 CALM1P2-201ENST00000452941 448 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 FABP3P2-201ENST00000453169 399 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 Z82190.1-201ENST00000454534 490 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC130509.1-201ENST00000464158 433 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC023598.1-201ENST00000472521 361 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC022133.1-201ENST00000490961 571 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC021146.2-201ENST00000504736 556 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 RNU6-123P-201ENST00000516163 102 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 RNU6-277P-201ENST00000516272 106 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 IGHV3-63-201ENST00000518422 341 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC022360.1-201ENST00000521058 340 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC027544.3-201ENST00000535082 757 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AL358913.1-201ENST00000554342 121 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC011840.5-201ENST00000582125 771 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 RNA5SP440-201ENST00000612665 119 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC108479.2-201ENST00000617314 601 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC005858.4-201ENST00000623191 700 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC007342.8-201ENST00000623278 678 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 AC099654.6-201ENST00000636487 512 ntBASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC39Q9UFE4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 OR5P1P-201ENST00000299512 925 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 Y_RNA.459-201ENST00000384251 102 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP16-201ENST00000410180 299 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC109780.2-201ENST00000413467 845 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AL590806.1-201ENST00000415818 853 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 USP9YP16-201ENST00000430287 407 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 RGS5-217ENST00000451759 835 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 USP9YP23-201ENST00000455085 407 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 GAPDHP39-201ENST00000481866 979 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 SETP14-201ENST00000497538 873 ntBASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC39Q9UFE4 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms